PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G135600.1
Common NamePOPTR_0013s13920g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 470aa    MW: 52071.2 Da    PI: 6.7401
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G135600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.4e-19231281256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Potri.013G135600.1 231 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 281
                         59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.00E-33230290No hitNo description
Gene3DG3DSA:3.30.730.105.0E-32231289IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22231289IPR016177DNA-binding domain
SMARTSM003802.7E-40231294IPR001471AP2/ERF domain
PROSITE profilePS5103222.932231288IPR001471AP2/ERF domain
PfamPF008472.5E-12232281IPR001471AP2/ERF domain
PRINTSPR003671.0E-10232243IPR001471AP2/ERF domain
PRINTSPR003671.0E-10254270IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MAAAKNNFGK SKKGVVDETR KMMMEQDWQL DRGKKEADVS FERRQWKPVF GEASLMDRPL  60
KKICSPERQE QIQSSASLAH QLPSCFSVSS SSASTLSLYP PSSSPSPMSS SSSRLVFPFA  120
FEGSNQPIQC PQQFRTNPSL PIFHPLSQVA QNQQQMISFG QNQQHGIAYP PFYAGGLPMA  180
DHHHHHQQLF QYWSDALNLS PRGRMMMMNK LGPDGRPLFR PPIQPINTRK LYRGVRQRHW  240
GKWVAEIRLP RNRTRLWLGT FDTAEDAALA YDREAFKLRG ENARLNFPEL FLNKDKATST  300
APSSTVSSPP TSNQSLKPKQ AQEGLNLQAE TMSPPILPPQ PPPEQPPGDH PDDDSGMGSS  360
GATVSDEIQA VAEGSSAGEG ISGSQELEWG DMAEAWYNAI QAGWGPGSPV WDDLDSTNNL  420
LLQSHLPFVN PNQQQFNDSC CVLQDNMGSA SSSSSSFFPM KSYFLKDQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21230288160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G135600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2140330.0AC214033.1 Populus trichocarpa clone POP046-C14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319909.20.0uncharacterized protein LOC7494418
TrEMBLB9I5K40.0B9I5K4_POPTR; Uncharacterized protein
STRINGPOPTR_0013s13920.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.12e-53ERF family protein