PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G130900.1
Common NamePOPTR_0013s13450g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 675aa    MW: 73667.5 Da    PI: 6.8317
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G130900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.85.9e-143683148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd  l++ v+++G ++W+++ +  g+ R++k+c+ rw ++l
  Potri.013G130900.1 36 KGPWSAEEDAMLIEHVNKYGERNWNAVHKLSGLPRCGKSCRVRWTTHL 83
                        79******************************99**********9986 PP
2Myb_DNA-binding48.32.4e-15122169148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT+ Ed +l+++v+++G g+W++  ++  + R++k+c++rw ++l
  Potri.013G130900.1 122 KGPWTAAEDAILIEYVNKHGEGNWNALQKRSVLARCGKSCRLRWTNHL 169
                         79*******************************************996 PP
3Myb_DNA-binding49.31.2e-15175218146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g++++eE+ ++v++++q+G++ W++ a++++ gRt++++k++w++
  Potri.013G130900.1 175 KGNFSAEEERIIVELHAQFGNK-WARMAARLP-GRTDNDIKNFWNT 218
                         79********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.9813187IPR017930Myb domain
SMARTSM007172.3E-143585IPR001005SANT/Myb domain
PfamPF002491.8E-123683IPR001005SANT/Myb domain
SuperFamilySSF466899.84E-1837105IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-2037100IPR009057Homeodomain-like
CDDcd001675.77E-113883No hitNo description
PROSITE profilePS5129415.51117169IPR017930Myb domain
SuperFamilySSF466892.43E-29120216IPR009057Homeodomain-like
SMARTSM007171.5E-13121171IPR001005SANT/Myb domain
PfamPF002497.6E-14122169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-23123176IPR009057Homeodomain-like
CDDcd001671.42E-11124169No hitNo description
PROSITE profilePS5129423.453170224IPR017930Myb domain
SMARTSM007172.3E-15174222IPR001005SANT/Myb domain
PfamPF002494.8E-14175218IPR001005SANT/Myb domain
CDDcd001672.62E-11177218No hitNo description
Gene3DG3DSA:1.10.10.601.7E-24177222IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MMEPVGNIDG VGARSDGGSS SMSKGGDEGG EFQLKKGPWS AEEDAMLIEH VNKYGERNWN  60
AVHKLSGLPR CGKSCRVRWT THLRPNAKEG AFSAEEDRII DELDAQISAS NDDEGGGGEL  120
KKGPWTAAED AILIEYVNKH GEGNWNALQK RSVLARCGKS CRLRWTNHLR PNLKKGNFSA  180
EEERIIVELH AQFGNKWARM AARLPGRTDN DIKNFWNTRT KRLLRHRLPL YPPEILPQNP  240
PSPQHDNNNK KSHSLPSTPT SSFTFPTTQL LSPTTPTNPQ NNLTSPARAF TPPATPTHPP  300
TAARPPTPAA LHPSPPPFTA PPISPLSSPS TANFPTLPLF DFSLPRAPPI LHIPPRFKNF  360
SQSSSATSPN NTTIVNTPPT SHSITVPASY FSLPSSPLPA ITSPSNTSPL SYEIPCCFTN  420
LLSSNSSEFH KEMERENEKL CLLLASVTQT DHLPFAQLLS PTSLNWNSAS SSIPTTTTNT  480
TAVPAKIGRT RIRRMKNVTT SGKGKRNSIG FGATESSRIG LLQEDLMQEV KAALEVNEKD  540
TSTKQSHLVF QDAQQKPKEL MFEDFCGIQY SDLSSSLSLS SELTPTDGEV AEQLNSSMTD  600
DLTKLLDIFP SSPLQLSDLY TDDISKGQTS VIIDDNNMDI DMQQQIALLF PTTATDQGGR  660
TVGTGSWDSL PGIY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-31332223157MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-31332223157MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G130900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376488.10.0myb protein
TrEMBLB9N5V30.0B9N5V3_POPTR; Uncharacterized protein
STRINGPOPTR_0013s13450.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2815233
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.17e-51myb domain protein 33