PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.013G123100.1 | ||||||||
Common Name | POPTR_0013s12690g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | VOZ | ||||||||
Protein Properties | Length: 448aa MW: 49996.5 Da PI: 5.67 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 438.9 | 6.3e-135 | 211 | 427 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwn 91 pppsaf+gpkcalwdctrpaq +ewl+dycssfhatlalneg+pg++pvlrp+gi+lkd+llf+al ak+qgk+vgip+cegaa +kspwn Potri.013G123100.1 211 PPPSAFMGPKCALWDCTRPAQVAEWLEDYCSSFHATLALNEGPPGMAPVLRPRGINLKDNLLFDALIAKMQGKNVGIPQCEGAAVMKSPWN 301 89***************************************************************************************** PP VOZ 92 aaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalal 182 aaelfdlsll+getirewlffdkprraf+sgnrkqrslpdy+grgwhesrkqvmke+gg+k+syymdpqp++++ewhl+eyein++d +al Potri.013G123100.1 302 AAELFDLSLLDGETIREWLFFDKPRRAFDSGNRKQRSLPDYNGRGWHESRKQVMKELGGQKKSYYMDPQPPGCHEWHLFEYEINKCDLCAL 392 ******************************************************************************************* PP VOZ 183 yrlelklvdekksakgkvskdsladlqkklgrlta 217 yrlelkl+++k+s+kgkvskd+ladlqkk+grlta Potri.013G123100.1 393 YRLELKLTNGKRSPKGKVSKDPLADLQKKMGRLTA 427 *********************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 448 aa Download sequence Send to blast |
MQKGKKSKCT SVSHHLLMDN AKTRLNDLHE RFSNLQAARK EGWNSDVAVL EEQVYQGLRE 60 WKAELDVPSP ANSLLDISLG SFSDDIGRLL QLYEEEDDAT SPLTMQLVLK PEMQPEPNFQ 120 NLNPGNLTTF QHEYLVNSHG QGLGFQGFHQ PNSSASGLQN VVVSAPDITT LLDCQQFTLD 180 EEFDPGLFGG TNDIEECGKN AESNNLQYIS PPPSAFMGPK CALWDCTRPA QVAEWLEDYC 240 SSFHATLALN EGPPGMAPVL RPRGINLKDN LLFDALIAKM QGKNVGIPQC EGAAVMKSPW 300 NAAELFDLSL LDGETIREWL FFDKPRRAFD SGNRKQRSLP DYNGRGWHES RKQVMKELGG 360 QKKSYYMDPQ PPGCHEWHLF EYEINKCDLC ALYRLELKLT NGKRSPKGKV SKDPLADLQK 420 KMGRLTAVVT ADNGPPLKGK TKADREN* |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.013G123100.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC213156 | 0.0 | AC213156.1 Populus trichocarpa clone POP076-I18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024438833.1 | 0.0 | transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 1e-167 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A2K1Y4Q3 | 0.0 | A0A2K1Y4Q3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s12690.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1498 | 34 | 94 | Representative plant | OGRP2327 | 13 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-170 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.013G123100.1 |
Entrez Gene | 18104553 |
Publications ? help Back to Top | |||
---|---|---|---|
|