PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G110700.2
Common NamePOPTR_0013s11510g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 379aa    MW: 40525.7 Da    PI: 7.0805
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G110700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.36.6e-39892253123
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg..... 88 
                         + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt + +a+++++ ++  +++    +     
  Potri.013G110700.2  89 TTKRPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTAFYDANNASETRRAMASNP---Pmlgfh 176
                         6899***********************************************************7777755522233222221...123344 PP

                 TCP  89 ................kaaksaakskksqksaasalnlakesrakararar 123
                                         k  ++     k++++++s+  + ++ +ak+ra  +
  Potri.013G110700.2 177 hqlypqnlvsddnymrKTFRE--DLFKETTQQQSTETIEASNSAKSRAGVQ 225
                         555566677777775422333..3333333333335666666666666533 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.08594148IPR017887Transcription factor TCP subgroup
PfamPF036342.3E-3294222IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MELMESQRNT ANQQSNSSGN KDHHGQKQES VAASLQLVPL ESRPSQLQQQ HGSTTTTPTS  60
QGPSMGSISC QIGTHPSTST SNSAVTKSTT KRPSKDRHTK VDGRGRRIRM PAMCAARVFQ  120
LTRELGHKSD GETIEWLLQQ AEPAIIATTG TAFYDANNAS ETRRAMASNP PMLGFHHQLY  180
PQNLVSDDNY MRKTFREDLF KETTQQQSTE TIEASNSAKS RAGVQDQETA GSIRPTTNML  240
PTPMWAVAPA ATTNGGNTFW MLPVGGGATP TSSVQEPQMW TFPAAAAGVP SMQRVNFGGG  300
GGRVSSPVQL GSMIVQQQVG ANQQLGLGIS ESNMGMILGG VNPYSSSRVG LGMNLEHHNQ  360
DNQPQGSDSG DENPNDSQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00614PBMTransfer from AT1G35560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G110700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2156260.0AC215626.1 Populus trichocarpa clone POP014-A12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439730.10.0transcription factor TCP23
SwissprotQ9C7G41e-64TCP22_ARATH; Transcription factor TCP22
TrEMBLU5FVY30.0U5FVY3_POPTR; Uncharacterized protein
STRINGPOPTR_0013s11510.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.14e-66TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]