PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.013G110700.2 | ||||||||
Common Name | POPTR_0013s11510g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 379aa MW: 40525.7 Da PI: 7.0805 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.3 | 6.6e-39 | 89 | 225 | 3 | 123 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg..... 88 + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt + +a+++++ ++ +++ + Potri.013G110700.2 89 TTKRPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTAFYDANNASETRRAMASNP---Pmlgfh 176 6899***********************************************************7777755522233222221...123344 PP TCP 89 ................kaaksaakskksqksaasalnlakesrakararar 123 k ++ k++++++s+ + ++ +ak+ra + Potri.013G110700.2 177 hqlypqnlvsddnymrKTFRE--DLFKETTQQQSTETIEASNSAKSRAGVQ 225 555566677777775422333..3333333333335666666666666533 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.085 | 94 | 148 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.3E-32 | 94 | 222 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MELMESQRNT ANQQSNSSGN KDHHGQKQES VAASLQLVPL ESRPSQLQQQ HGSTTTTPTS 60 QGPSMGSISC QIGTHPSTST SNSAVTKSTT KRPSKDRHTK VDGRGRRIRM PAMCAARVFQ 120 LTRELGHKSD GETIEWLLQQ AEPAIIATTG TAFYDANNAS ETRRAMASNP PMLGFHHQLY 180 PQNLVSDDNY MRKTFREDLF KETTQQQSTE TIEASNSAKS RAGVQDQETA GSIRPTTNML 240 PTPMWAVAPA ATTNGGNTFW MLPVGGGATP TSSVQEPQMW TFPAAAAGVP SMQRVNFGGG 300 GGRVSSPVQL GSMIVQQQVG ANQQLGLGIS ESNMGMILGG VNPYSSSRVG LGMNLEHHNQ 360 DNQPQGSDSG DENPNDSQ* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00614 | PBM | Transfer from AT1G35560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.013G110700.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215626 | 0.0 | AC215626.1 Populus trichocarpa clone POP014-A12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024439730.1 | 0.0 | transcription factor TCP23 | ||||
Swissprot | Q9C7G4 | 1e-64 | TCP22_ARATH; Transcription factor TCP22 | ||||
TrEMBL | U5FVY3 | 0.0 | U5FVY3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s11510.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72010.1 | 4e-66 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.013G110700.2 |
Entrez Gene | 18104436 |
Publications ? help Back to Top | |||
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