PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G110700.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 416aa    MW: 44122.8 Da    PI: 7.8137
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G110700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.75.7e-4089212389
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 
                         + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++  ++s +ss+++ s++    
  Potri.013G110700.1  89 TTKRPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTGTIPANFStLNVSLRSSGATISAPasks 179
                         6899****************************************************************99987777777777444444444 PP

                 TCP  89 ................................k 89 
                                                          
  Potri.013G110700.1 180 aplsfhgglafydannasetrramasnppmlgF 212
                         556666666665444444444444444444440 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.3E-3894263IPR005333Transcription factor, TCP
PROSITE profilePS5136928.08594148IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MELMESQRNT ANQQSNSSGN KDHHGQKQES VAASLQLVPL ESRPSQLQQQ HGSTTTTPTS  60
QGPSMGSISC QIGTHPSTST SNSAVTKSTT KRPSKDRHTK VDGRGRRIRM PAMCAARVFQ  120
LTRELGHKSD GETIEWLLQQ AEPAIIATTG TGTIPANFST LNVSLRSSGA TISAPASKSA  180
PLSFHGGLAF YDANNASETR RAMASNPPML GFHHQLYPQN LVSDDNYMRK TFREDLFKET  240
TQQQSTETIE ASNSAKSRAG VQDQETAGSI RPTTNMLPTP MWAVAPAATT NGGNTFWMLP  300
VGGGATPTSS VQEPQMWTFP AAAAGVPSMQ RVNFGGGGGR VSSPVQLGSM IVQQQVGANQ  360
QLGLGISESN MGMILGGVNP YSSSRVGLGM NLEHHNQDNQ PQGSDSGDEN PNDSQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00614PBMTransfer from AT1G35560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G110700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2156260.0AC215626.1 Populus trichocarpa clone POP014-A12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439730.10.0transcription factor TCP23
SwissprotQ9LQF01e-81TCP23_ARATH; Transcription factor TCP23
TrEMBLA0A2I4KK620.0A0A2I4KK62_POPTR; TCP family protein
STRINGPOPTR_0013s11510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Representative plantOGRP45911023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.14e-71TCP family protein