PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G092400.1
Common NamePOPTR_0013s09280g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 341aa    MW: 38868.2 Da    PI: 7.2694
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G092400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.91.9e-5381371129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                         +ppGfrFhPt+eel+++yLkkkv+ +k+++ evi+evd++k+ePw+L++  k+ +  ++ewyfFs+rd+ky+tg+r+nrat++g+Wkatg+
  Potri.013G092400.1   8 VPPGFRFHPTEEELLHYYLKKKVSFQKFDM-EVIREVDLNKMEPWELQEtcKIGStPQNEWYFFSHRDRKYPTGSRTNRATNAGFWKATGR 97 
                         69****************************.99**************963433332456******************************** PP

                 NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                         dk + + +++++g++ktLvfy+grap+g+ktdW+mheyrle
  Potri.013G092400.1  98 DKCIRN-TDKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 137
                         *****9.8899****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.01E-606159IPR003441NAC domain
PROSITE profilePS5100557.918159IPR003441NAC domain
PfamPF023659.9E-289136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MATSTGGVPP GFRFHPTEEE LLHYYLKKKV SFQKFDMEVI REVDLNKMEP WELQETCKIG  60
STPQNEWYFF SHRDRKYPTG SRTNRATNAG FWKATGRDKC IRNTDKKIGM RKTLVFYRGR  120
APHGQKTDWI MHEYRLEDGD DAQGNAGEDG WVVCRVFKKK NLFKVSNEGG TASMDSSDQQ  180
LHTSSNQSRT SMYRDSQYLI RQHHNHGSTQ QTFEPNKPEL ALYHHHMETP HQYSLFPSQT  240
LMPTHKPLGY DYSALPSDES LRYQACEPGL EVGTCEAPQQ MVAGRDEQGM NDQWAVLVTS  300
HLGNEDSSKG VTFNAANAPS AHPINQSSLR GEMDFWGYGK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-53816117167NO APICAL MERISTEM PROTEIN
1ut4_B6e-53816117167NO APICAL MERISTEM PROTEIN
1ut7_A6e-53816117167NO APICAL MERISTEM PROTEIN
1ut7_B6e-53816117167NO APICAL MERISTEM PROTEIN
3swm_A6e-53816120170NAC domain-containing protein 19
3swm_B6e-53816120170NAC domain-containing protein 19
3swm_C6e-53816120170NAC domain-containing protein 19
3swm_D6e-53816120170NAC domain-containing protein 19
3swp_A6e-53816120170NAC domain-containing protein 19
3swp_B6e-53816120170NAC domain-containing protein 19
3swp_C6e-53816120170NAC domain-containing protein 19
3swp_D6e-53816120170NAC domain-containing protein 19
4dul_A6e-53816117167NAC domain-containing protein 19
4dul_B6e-53816117167NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detectable in lateral root development when they reach 10 mm long. {ECO:0000269|PubMed:20197506}.
UniprotTISSUE SPECIFICITY: Expressed throughout the root cap, in both columella (COL) and lateral root cap (LRC) cells, with higher levels in the COL-adjoining LRC than the upper LRC. Also present at low levels expression in the tips of cotyledons and the cotyledon vasculature, as weel as in vasculature of the first pair of true leaves and at the hydathodes. {ECO:0000269|PubMed:20197506}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G092400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103820.0AC210382.1 Populus trichocarpa clone POP018-P22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319872.20.0protein BEARSKIN2
SwissprotQ9SV871e-151BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A2K1Y3D90.0A0A2K1Y3D9_POPTR; Uncharacterized protein
STRINGPOPTR_0013s09280.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87523343
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-154NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]