PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.013G092400.1 | ||||||||
Common Name | POPTR_0013s09280g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 341aa MW: 38868.2 Da PI: 7.2694 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.9 | 1.9e-53 | 8 | 137 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppGfrFhPt+eel+++yLkkkv+ +k+++ evi+evd++k+ePw+L++ k+ + ++ewyfFs+rd+ky+tg+r+nrat++g+Wkatg+ Potri.013G092400.1 8 VPPGFRFHPTEEELLHYYLKKKVSFQKFDM-EVIREVDLNKMEPWELQEtcKIGStPQNEWYFFSHRDRKYPTGSRTNRATNAGFWKATGR 97 69****************************.99**************963433332456******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 dk + + +++++g++ktLvfy+grap+g+ktdW+mheyrle Potri.013G092400.1 98 DKCIRN-TDKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 137 *****9.8899****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.01E-60 | 6 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.91 | 8 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.9E-28 | 9 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MATSTGGVPP GFRFHPTEEE LLHYYLKKKV SFQKFDMEVI REVDLNKMEP WELQETCKIG 60 STPQNEWYFF SHRDRKYPTG SRTNRATNAG FWKATGRDKC IRNTDKKIGM RKTLVFYRGR 120 APHGQKTDWI MHEYRLEDGD DAQGNAGEDG WVVCRVFKKK NLFKVSNEGG TASMDSSDQQ 180 LHTSSNQSRT SMYRDSQYLI RQHHNHGSTQ QTFEPNKPEL ALYHHHMETP HQYSLFPSQT 240 LMPTHKPLGY DYSALPSDES LRYQACEPGL EVGTCEAPQQ MVAGRDEQGM NDQWAVLVTS 300 HLGNEDSSKG VTFNAANAPS AHPINQSSLR GEMDFWGYGK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-53 | 8 | 161 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-53 | 8 | 161 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-53 | 8 | 161 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-53 | 8 | 161 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-53 | 8 | 161 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 6e-53 | 8 | 161 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 6e-53 | 8 | 161 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 6e-53 | 8 | 161 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 6e-53 | 8 | 161 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 6e-53 | 8 | 161 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 6e-53 | 8 | 161 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 6e-53 | 8 | 161 | 20 | 170 | NAC domain-containing protein 19 |
4dul_A | 6e-53 | 8 | 161 | 17 | 167 | NAC domain-containing protein 19 |
4dul_B | 6e-53 | 8 | 161 | 17 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detectable in lateral root development when they reach 10 mm long. {ECO:0000269|PubMed:20197506}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed throughout the root cap, in both columella (COL) and lateral root cap (LRC) cells, with higher levels in the COL-adjoining LRC than the upper LRC. Also present at low levels expression in the tips of cotyledons and the cotyledon vasculature, as weel as in vasculature of the first pair of true leaves and at the hydathodes. {ECO:0000269|PubMed:20197506}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.013G092400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210382 | 0.0 | AC210382.1 Populus trichocarpa clone POP018-P22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002319872.2 | 0.0 | protein BEARSKIN2 | ||||
Swissprot | Q9SV87 | 1e-151 | BRN2_ARATH; Protein BEARSKIN2 | ||||
TrEMBL | A0A2K1Y3D9 | 0.0 | A0A2K1Y3D9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s09280.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8752 | 33 | 43 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10350.1 | 1e-154 | NAC domain containing protein 70 |
Link Out ? help Back to Top | |
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Phytozome | Potri.013G092400.1 |
Entrez Gene | 7479032 |
Publications ? help Back to Top | |||
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