PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G090300.1
Common NamePOPTR_0013s09470g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 325aa    MW: 36691.8 Da    PI: 5.1615
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G090300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.52.6e-23132192259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK + ++++prsY+rC+ +   gC+++k+v+r +++p++ ++tY g+H+++
  Potri.013G090300.1 132 EDSHAWRKYGQKGILNAKYPRSYFRCSRKyeqGCKATKQVQRMEDNPDLYHTTYIGSHTCR 192
                         8**************************988889**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-23118192IPR003657WRKY domain
PROSITE profilePS5081118.934126189IPR003657WRKY domain
SuperFamilySSF1182902.62E-22128192IPR003657WRKY domain
SMARTSM007742.0E-32131193IPR003657WRKY domain
PfamPF031061.2E-22132192IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGTCLSEKLS SSRERVIKEL VQGHEFAAQL QIRLQKPCGN FDGRFSSAGE LVGKILRSFS  60
ETLSVITSSE SAGGEICQNL ASSLGDSACY DDRRSEDSGE SKKRPATTKD RRGCYKRKKI  120
SQSWTTVCPT IEDSHAWRKY GQKGILNAKY PRSYFRCSRK YEQGCKATKQ VQRMEDNPDL  180
YHTTYIGSHT CRNIPEAPQI ITDSDPWESY NLTSSVISSH SKIPRYEEQD HHPIMGSPCE  240
VEQESKEDQT PSGLADNVSS LDSFMWKDLI PFEEPVDEPS MILRSDYEAV DSIHLFSCTE  300
VTSQSLDMDF VVKSFDFDCD FHFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-21125192269OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101118KKRPATTKDRRGCYKRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G090300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319879.30.0probable WRKY transcription factor 70
TrEMBLA0A2K1Y3950.0A0A2K1Y395_POPTR; Uncharacterized protein
STRINGPOPTR_0013s09470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-53WRKY DNA-binding protein 70