PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G086000.2
Common NamePOPTR_0013s08380g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 537aa    MW: 59197 Da    PI: 8.8131
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G086000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30156213260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +DgynWrKYGqK+vkgse+prsYY+C +a+C vkkk+e+++ +++++ei+Y+g+Hnh+k
  Potri.013G086000.2 156 EDGYNWRKYGQKQVKGSEYPRSYYKCNHANCLVKKKIECAH-EGQITEIIYKGSHNHPK 213
                         7***************************************9.***************85 PP
2WRKY105.62.6e-33277335159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k+v+itYeg+Hnhe
  Potri.013G086000.2 277 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCSVRKHVERASHDLKYVIITYEGKHNHE 335
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-26153214IPR003657WRKY domain
SuperFamilySSF1182909.55E-24155214IPR003657WRKY domain
SMARTSM007741.9E-32155213IPR003657WRKY domain
PROSITE profilePS5081121.723156214IPR003657WRKY domain
PfamPF031061.9E-23156212IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.2E-37262337IPR003657WRKY domain
SuperFamilySSF1182901.44E-28270337IPR003657WRKY domain
PROSITE profilePS5081137.815272337IPR003657WRKY domain
SMARTSM007741.3E-37277336IPR003657WRKY domain
PfamPF031062.1E-25278335IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MDNNPAAEYK TLLWVPNLET KSSNGGVGGD NYRGISIAER RAAKCGFKMK AERINTARFR  60
TTSPLTSPLR SPFITIPSGI SPTALLDSPI MLSNSHVQPS PTTGTFPLSP LKYESESFNP  120
IYVQRETIHG ENVASCRLME EIKRTLPATT IGRSSEDGYN WRKYGQKQVK GSEYPRSYYK  180
CNHANCLVKK KIECAHEGQI TEIIYKGSHN HPKPQPKTYE STKTPELSST LASHDDDGVT  240
QGSSFGADAD DESESKRRAA IREPRVVVQI ESEVDILDDG YRWRKYGQKV VKGNPNPRSY  300
YKCTSAGCSV RKHVERASHD LKYVIITYEG KHNHEVPAAR NSSHGNSTGS NFSQTTGNAQ  360
LALALARNTN APNPEAQIQE FAPSFDRKPV FNNDYLRSNL PGNFSNEMNL GSSFVYPMRF  420
PPIQNAMPYD SFGFSNNQLA ASHSGSVASL VPDFPRSLSP CLQTAANLSL ARVDFSCDGK  480
PVGQVQTFLQ GQQSIRPKQE QKDDNLYGAS SSIMDNLNAP SSSLSVYHQL LGNFQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-34156338878Probable WRKY transcription factor 4
2lex_A4e-34156338878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY25 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:21336597}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G086000.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (PubMed:11449049). Induced by heat stress (PubMed:21336597). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:21336597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164180.0AC216418.1 Populus trichocarpa clone POP052-D15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438829.10.0WRKY transcription factor WRKY24
SwissprotQ9C5T31e-91WRK26_ARATH; Probable WRKY transcription factor 26
TrEMBLA0A2K1Y3350.0A0A2K1Y335_POPTR; Uncharacterized protein
STRINGPOPTR_0013s08380.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.14e-94WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]