PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G086000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 717aa    MW: 78466.2 Da    PI: 7.0573
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G086000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.6e-30255312260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +DgynWrKYGqK+vkgse+prsYY+C +a+C vkkk+e+++ +++++ei+Y+g+Hnh+k
  Potri.013G086000.1 255 EDGYNWRKYGQKQVKGSEYPRSYYKCNHANCLVKKKIECAH-EGQITEIIYKGSHNHPK 312
                         7***************************************9.***************85 PP
2WRKY1053.9e-33457515159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k+v+itYeg+Hnhe
  Potri.013G086000.1 457 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCSVRKHVERASHDLKYVIITYEGKHNHE 515
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-26252313IPR003657WRKY domain
SuperFamilySSF1182901.44E-23254313IPR003657WRKY domain
SMARTSM007741.9E-32254312IPR003657WRKY domain
PfamPF031062.8E-23255311IPR003657WRKY domain
PROSITE profilePS5081121.723255313IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-36442517IPR003657WRKY domain
SuperFamilySSF1182902.09E-28450517IPR003657WRKY domain
PROSITE profilePS5081137.815452517IPR003657WRKY domain
SMARTSM007741.3E-37457516IPR003657WRKY domain
PfamPF031063.1E-25458515IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MDNNPAAEYK TLLWVPNLET KSSNGGVGGD NYRGISIAER RAAKCGFKMK AERINTARFR  60
TTSPLTSPLR SPFITIPSGI SPTALLDSPI MLSNSHVQPS PTTGTFPLSP LKYESESLLR  120
CGDGERGSNA GGLSFRFRFK HLGNSLPLSE NQGNDFDFEA TLLMDPSMDF QLPVEFSKQV  180
TPDKCTSDSH TDVNVLDSVI GNANISDMQI CSSDLASNPI YVQRETIHGE NVASCRLMEE  240
IKRTLPATTI GRSSEDGYNW RKYGQKQVKG SEYPRSYYKC NHANCLVKKK IECAHEGQIT  300
EIIYKGSHNH PKPQPSCGAP PGPASSLDGT PEMDQGESVQ KNTKSGFKDI KVQSDWRTDG  360
PQRTSSTSAV TELSSTTQIK SLETYESTKT PELSSTLASH DDDGVTQGSS FGADADDESE  420
SKRRKIESCL VETNMASRAA IREPRVVVQI ESEVDILDDG YRWRKYGQKV VKGNPNPRSY  480
YKCTSAGCSV RKHVERASHD LKYVIITYEG KHNHEVPAAR NSSHGNSTGS NFSQTTGNAQ  540
LALALARNTN APNPEAQIQE FAPSFDRKPV FNNDYLRSNL PGNFSNEMNL GSSFVYPMRF  600
PPIQNAMPYD SFGFSNNQLA ASHSGSVASL VPDFPRSLSP CLQTAANLSL ARVDFSCDGK  660
PVGQVQTFLQ GQQSIRPKQE QKDDNLYGAS SSIMDNLNAP SSSLSVYHQL LGNFQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-34255518878Probable WRKY transcription factor 4
2lex_A8e-34255518878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G086000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1179310.0JN117931.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor (WRKY35) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438829.10.0WRKY transcription factor WRKY24
TrEMBLA0A2K1Y3350.0A0A2K1Y335_POPTR; Uncharacterized protein
STRINGPOPTR_0013s08380.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83493445
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.15e-93WRKY DNA-binding protein 2