PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.013G079700.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 148aa MW: 16844.1 Da PI: 8.637 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 91.5 | 1.4e-28 | 12 | 133 | 3 | 127 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkk..yatgkrknratksgyWkatgkdke 91 +G rF+P++ee+++++L++k+ g+++ + + i+++diy+++PwdLp ++++++e yfFs+ + k y+++ r nr+t++g W+a+g+d + Potri.013G079700.8 12 VGDRFSPNNEEIINHFLRHKLLGNDHLV-SKIPQLDIYQFDPWDLP-WINSKDREGYFFSPLHAKnsYTNNGRINRSTNTGSWQAKGRDCK 100 688**********************887.77***************.788999******9765551167999******************* PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 v+s+ +ge++g+kk++v ++g + vmhe++ Potri.013G079700.8 101 VTSElNGEVIGIKKIFVHSC--IKDG--IKYVMHEFS 133 ***9999**********983..3333..579999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 27.302 | 10 | 147 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-15 | 12 | 133 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.62E-29 | 12 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MTSKATCLAS DVGDRFSPNN EEIINHFLRH KLLGNDHLVS KIPQLDIYQF DPWDLPWINS 60 KDREGYFFSP LHAKNSYTNN GRINRSTNTG SWQAKGRDCK VTSELNGEVI GIKKIFVHSC 120 IKDGIKYVMH EFSASFNLPN CRDLVRL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-20 | 13 | 132 | 18 | 138 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.013G079700.8 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024439150.1 | 1e-105 | NAC domain-containing protein 71 | ||||
Refseq | XP_024439151.1 | 1e-105 | NAC domain-containing protein 71 | ||||
Refseq | XP_024439152.1 | 1e-105 | NAC domain-containing protein 71 | ||||
TrEMBL | A0A2K1Y2S6 | 1e-104 | A0A2K1Y2S6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s07720.1 | 7e-61 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.1 | 1e-24 | NAC domain containing protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Potri.013G079700.8 |