PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G079700.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 279aa    MW: 31232.8 Da    PI: 4.7523
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G079700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.98.9e-28121333127
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkk..yatgkrknratksgyWkatgkdke 91 
                         +G rF+P++ee+++++L++k+ g+++ + + i+++diy+++PwdLp  ++++++e yfFs+ + k  y+++ r nr+t++g W+a+g+d +
  Potri.013G079700.1  12 VGDRFSPNNEEIINHFLRHKLLGNDHLV-SKIPQLDIYQFDPWDLP-WINSKDREGYFFSPLHAKnsYTNNGRINRSTNTGSWQAKGRDCK 100
                         688**********************887.77***************.788999******9765551167999******************* PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                         v+s+ +ge++g+kk++v      ++g   + vmhe++
  Potri.013G079700.1 101 VTSElNGEVIGIKKIFVHSC--IKDG--IKYVMHEFS 133
                         ***9999**********983..3333..579999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.84110155IPR003441NAC domain
PfamPF023651.3E-1412133IPR003441NAC domain
SuperFamilySSF1019416.28E-3112155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MTSKATCLAS DVGDRFSPNN EEIINHFLRH KLLGNDHLVS KIPQLDIYQF DPWDLPWINS  60
KDREGYFFSP LHAKNSYTNN GRINRSTNTG SWQAKGRDCK VTSELNGEVI GIKKIFVHSC  120
IKDGIKYVMH EFSASFNLPN CRDLRALVLC KVMMKTLDKK TEGSYMKVKE TEEEASSPPA  180
SDEDQQTDNL ICDDGGTNCL AASASANHAV EFTIPEEVDL EIPPHLQLFP GYDQQDYNHG  240
FIFYDQPLIL TGQLHADNGP GTSSTEEDMF NGFGSLWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-18215512168NAC domain-containing protein 19
3swm_B1e-18215512168NAC domain-containing protein 19
3swm_C1e-18215512168NAC domain-containing protein 19
3swm_D1e-18215512168NAC domain-containing protein 19
3swp_A1e-18215512168NAC domain-containing protein 19
3swp_B1e-18215512168NAC domain-containing protein 19
3swp_C1e-18215512168NAC domain-containing protein 19
3swp_D1e-18215512168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G079700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439150.10.0NAC domain-containing protein 71
RefseqXP_024439151.10.0NAC domain-containing protein 71
RefseqXP_024439152.10.0NAC domain-containing protein 71
TrEMBLA0A2K1Y2S60.0A0A2K1Y2S6_POPTR; Uncharacterized protein
STRINGPOPTR_0013s07720.11e-118(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3974122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.12e-24NAC domain containing protein 57