PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.013G066700.1 | ||||||||
Common Name | POPTR_0013s06290g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 495aa MW: 53797.4 Da PI: 6.9878 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.4 | 3.7e-39 | 100 | 159 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ Potri.013G066700.1 100 PDKILPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGSMRNVPIGAGRRKNKHL 159 7899*****************************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-30 | 93 | 157 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.1E-31 | 102 | 158 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.733 | 104 | 158 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 106 | 142 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 495 aa Download sequence Send to blast |
MKGESKDPAF KLFGRKIPVP DTQFPAEPLA KGTCSEITRV ETKGPSEDIS EEPEMFSGSG 60 QGKEESQAAM RVNEAQVIAK HKEGPLETNG TDQEKVLKKP DKILPCPRCN SLDTKFCYFN 120 NYNVNQPRHF CKNCQRYWTA GGSMRNVPIG AGRRKNKHLA TQYRQILVSS DGMPIARMEN 180 SDSIGHQLQS SVESGTTLSP SVANGMVLKF GHEAPLCDSM ENVLNLGDQK RYVEISSVNR 240 QDNVEEPSSC GSSKTASNAW ANELRENIMQ KEQVDVPASS NELSAPNSLP YYSVPSWVFP 300 WNPGWNNVAS MTAAQHSTGQ ACVTNIPNQV QLCSTPMLAV PSICPPNIPL QFVPASYWGC 360 MPTWAAGTRN VSLSGSNGCL SLSTSANTSS CSGNGSPTLG KHSRDSKFME EEKAEKCILV 420 PKTLRIDDPS EASKSPLWAT LGLKPDQKDP ASKGTIFKNF ETKAECYGHV SDITHVLEAN 480 PAALSRSHTF QESG* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.013G066700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002319195.2 | 0.0 | cyclic dof factor 3 isoform X1 | ||||
Refseq | XP_024439742.1 | 0.0 | cyclic dof factor 3 isoform X2 | ||||
TrEMBL | A0A2K1Y217 | 0.0 | A0A2K1Y217_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A3N7FVM2 | 0.0 | A0A3N7FVM2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s06290.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3502 | 31 | 65 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G39660.2 | 6e-63 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.013G066700.1 |
Entrez Gene | 7489704 |