PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.013G060200.1 | ||||||||
Common Name | POPTR_0013s05670g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | G2-like | ||||||||
Protein Properties | Length: 428aa MW: 47568.6 Da PI: 7.0122 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.1 | 1e-33 | 46 | 100 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl Potri.013G060200.1 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.014 | 43 | 103 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-31 | 44 | 101 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.14E-17 | 45 | 101 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.3E-23 | 46 | 101 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.1E-10 | 48 | 99 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.1E-24 | 154 | 200 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MYHHHQHQGK SIHSSSRMAI PPERHLFLQG GNGPGDSGLV LSTDAKPRLK WTPDLHERFI 60 EAVNQLGGAD KATPKTVMKL MGIPGLTLYH LKSHLQKYRL SKNLHGQANI GSSKIGTVAV 120 VGDRMPEANA THININNLSI GSQPNKILKS RSLHFSEALQ MQIEVQRRLH EQLEVQRHLQ 180 LRIEAQGKYL QAVLEKAQET LGRQNLGTVG LEAAKVQLSE LVSKVSTQCL NSTFSELNDL 240 QGLCPQQTPP TQPNDCSMDS CLTSCEGSQK EQEIHNIGMG LRPCNSNALL EPKEIAEEHA 300 LQQTELKWGE YLRDNKMFLT SIGHETERRT FSAERSCSDL SIGVGLQGEK GNINSSFAEG 360 RFKGMSEDDS FQDQTNKRAE SVKFEDEKMS PGYRLSYFTT KLDLNSHDEI DAASSCKQLD 420 LNGFSWN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-21 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-21 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 4e-21 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-21 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-21 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-21 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-21 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-21 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-21 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-21 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-21 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-21 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00331 | DAP | Transfer from AT3G04030 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.013G060200.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002319702.2 | 0.0 | myb-related protein 2 isoform X1 | ||||
Swissprot | Q9SQQ9 | 1e-158 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | A0A2K1Y1P4 | 0.0 | A0A2K1Y1P4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s05670.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3852 | 31 | 63 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-161 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.013G060200.1 |
Entrez Gene | 7482358 |
Publications ? help Back to Top | |||
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