PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G056400.1
Common NamePOPTR_0013s05300g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 305aa    MW: 34269.2 Da    PI: 7.1523
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G056400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.2e-172774148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+eEdell++++k  G g+W+t ++  g+ R++k+c++rw +yl
  Potri.013G056400.1 27 RGPWTPEEDELLANYIKNDGEGRWRTLPKQAGLLRCGKSCRLRWMNYL 74
                        89******************************99************97 PP
2Myb_DNA-binding48.42.2e-1580125148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rgr  ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Potri.013G056400.1  80 RGRIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 125
                         678889****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-221876IPR009057Homeodomain-like
PROSITE profilePS5129415.7622274IPR017930Myb domain
SuperFamilySSF466891.94E-2824121IPR009057Homeodomain-like
SMARTSM007172.5E-112676IPR001005SANT/Myb domain
PfamPF002491.6E-142774IPR001005SANT/Myb domain
CDDcd001672.29E-92974No hitNo description
PROSITE profilePS5129424.57875129IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2477130IPR009057Homeodomain-like
SMARTSM007173.4E-1479127IPR001005SANT/Myb domain
PfamPF002496.8E-1481125IPR001005SANT/Myb domain
CDDcd001673.68E-1185125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MRNLSSRNST RSRSTPTPCC SKVGIKRGPW TPEEDELLAN YIKNDGEGRW RTLPKQAGLL  60
RCGKSCRLRW MNYLRPSVKR GRIAPDEEDL ILRLHRLLGN RWSLIAGRIP GRTDNEIKNY  120
WNTHLSKKLI SQGIDPRTHK PLYPNPNSSE IANIAPTQNS NPNSFPLEEN ARVDRATATR  180
VIENLTITNL DQFPNQVIDD GAKNWPSCDG FNKGLQSHHE QNKEEDYIGN ENEDTFSLFL  240
DSLINENVFA YQQQQQCNII GPSGQPVISS SQAFHHGSIW EAEVTSSMAA FGEKDGALNS  300
DDLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-24271297108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G056400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319686.10.0transcription repressor MYB5
SwissprotQ388502e-77MYB5_ARATH; Transcription repressor MYB5
TrEMBLB9I5W50.0B9I5W5_POPTR; Uncharacterized protein
STRINGPOPTR_0013s05300.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.16e-75myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]