PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.013G054200.1 | ||||||||
Common Name | POPTR_0013s05110g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 390aa MW: 44068.2 Da PI: 6.2458 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 183.7 | 4.5e-57 | 16 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lp+GfrFhPtdee++++yL++kv ++ + + +i evd++k+ePwdLpkk+k +e+ewyfF++rd+ky+tg r+nrat+sgyWkatgkdke Potri.013G054200.1 16 LPAGFRFHPTDEEIISHYLTEKVMKSGFCA-IAIGEVDLNKCEPWDLPKKAKMGENEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKE 105 799************************888.78***************99999************************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++++k+ lvg+kktLvfy+grapkgekt+Wvmheyrle Potri.013G054200.1 106 IHKEKNCLVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 143 ***9********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-63 | 12 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.684 | 16 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.4E-30 | 17 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MEEAVVVNKG DDQIHLPAGF RFHPTDEEII SHYLTEKVMK SGFCAIAIGE VDLNKCEPWD 60 LPKKAKMGEN EWYFFCQRDR KYPTGMRTNR ATESGYWKAT GKDKEIHKEK NCLVGMKKTL 120 VFYRGRAPKG EKTNWVMHEY RLEGKFSYYS LPKVARDEWV VCRIFHKSTG MKKTSIHDLL 180 RMNSFGDDFL DCSSLPPLMD PPNYTSSFSD ADNNEFKAMM TSRSSDGNCF SNTSMLNNNQ 240 GFVQPPNTNY QTPNSSFHLQ TPASNPLYTF QTNPNMPVYL QQGKSTNSFP NFQNSTFGNN 300 GQTLLRALAA GNNYGEASDQ LGKQCKVEQF SSNQSMVSLS QDTGLSTDVN TTTEISSVVS 360 KQEIGSHNEF YESLEDPLAG PIADYMWDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-52 | 13 | 173 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-52 | 13 | 173 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-52 | 13 | 173 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-52 | 13 | 173 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-52 | 13 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-52 | 13 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-52 | 13 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-52 | 13 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-52 | 13 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-52 | 13 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-52 | 13 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-52 | 13 | 173 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-52 | 13 | 173 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-52 | 13 | 173 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.013G054200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216771 | 1e-156 | AC216771.1 Populus trichocarpa clone POP051-N07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006375881.2 | 0.0 | NAC domain-containing protein 87 | ||||
Swissprot | Q9FK44 | 1e-113 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | A0A2K1Y1E0 | 0.0 | A0A2K1Y1E0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s05110.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF409 | 34 | 171 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.1 | 1e-115 | Arabidopsis NAC domain containing protein 87 |
Link Out ? help Back to Top | |
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Phytozome | Potri.013G054200.1 |
Entrez Gene | 18104112 |
Publications ? help Back to Top | |||
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