PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.013G054000.1 | ||||||||
Common Name | POPTR_0013s05080g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 369aa MW: 41603.9 Da PI: 8.5618 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.8 | 2.1e-53 | 8 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+ +yLkkk++++++++ ++i++vdiyk++PwdLp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk Potri.013G054000.1 8 LPPGFRFHPTDEELILHYLKKKLASTPFPV-SIIADVDIYKFDPWDLPAKASLGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKI 97 79****************************.89***************999999************************************* PP NAM 92 vlsk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ ++e++g+kk Lvfykg+ pkg+kt+W+mheyrl Potri.013G054000.1 98 IMAStmapggvvgGQENIGVKKALVFYKGKPPKGVKTNWIMHEYRL 143 ***99999988887888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.19E-64 | 5 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.295 | 8 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-27 | 9 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MKNPQSSLPP GFRFHPTDEE LILHYLKKKL ASTPFPVSII ADVDIYKFDP WDLPAKASLG 60 EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKIIMA STMAPGGVVG GQENIGVKKA 120 LVFYKGKPPK GVKTNWIMHE YRLADNPACN NNKKSMKPKD SSMRLDDWVL CRIYKKSHAL 180 TSSPRALISS EHDQEEEEEQ QQQQQFVQET LLPISNKNNL MSQKSCSFSN LFDAMDYSMW 240 SSFLADTPFN PTGFESNPTL NSTATQLDQP FFSNSNSASN SNSTSSGSFL QKLPQLNTSM 300 PNMQENKLKR QLPHIDEDLL HPSKKFMNSC SFTNTNNNTQ TDMGQYNFVS QPFLDQQLLL 360 SPHLQFLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-72 | 5 | 176 | 14 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-72 | 5 | 176 | 14 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-72 | 5 | 176 | 14 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-72 | 5 | 176 | 14 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 8e-72 | 5 | 176 | 14 | 165 | NAC domain-containing protein 19 |
4dul_B | 8e-72 | 5 | 176 | 14 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00333 | DAP | Transfer from AT3G04070 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.013G054000.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216771 | 0.0 | AC216771.1 Populus trichocarpa clone POP051-N07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002319143.3 | 0.0 | NAC transcription factor 47 | ||||
Swissprot | Q84TD6 | 1e-120 | NAC47_ARATH; NAC transcription factor 47 | ||||
TrEMBL | A0A2K1Y1C6 | 0.0 | A0A2K1Y1C6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s05080.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6621 | 27 | 50 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 1e-116 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | Potri.013G054000.1 |
Entrez Gene | 7489649 |
Publications ? help Back to Top | |||
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