PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G054000.1
Common NamePOPTR_0013s05080g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 369aa    MW: 41603.9 Da    PI: 8.5618
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G054000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.82.1e-5381431128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+ +yLkkk++++++++ ++i++vdiyk++PwdLp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk 
  Potri.013G054000.1   8 LPPGFRFHPTDEELILHYLKKKLASTPFPV-SIIADVDIYKFDPWDLPAKASLGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKI 97 
                         79****************************.89***************999999************************************* PP

                 NAM  92 vlsk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++         ++e++g+kk Lvfykg+ pkg+kt+W+mheyrl
  Potri.013G054000.1  98 IMAStmapggvvgGQENIGVKKALVFYKGKPPKGVKTNWIMHEYRL 143
                         ***99999988887888***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-645176IPR003441NAC domain
PROSITE profilePS5100561.2958176IPR003441NAC domain
PfamPF023651.3E-279143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MKNPQSSLPP GFRFHPTDEE LILHYLKKKL ASTPFPVSII ADVDIYKFDP WDLPAKASLG  60
EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKIIMA STMAPGGVVG GQENIGVKKA  120
LVFYKGKPPK GVKTNWIMHE YRLADNPACN NNKKSMKPKD SSMRLDDWVL CRIYKKSHAL  180
TSSPRALISS EHDQEEEEEQ QQQQQFVQET LLPISNKNNL MSQKSCSFSN LFDAMDYSMW  240
SSFLADTPFN PTGFESNPTL NSTATQLDQP FFSNSNSASN SNSTSSGSFL QKLPQLNTSM  300
PNMQENKLKR QLPHIDEDLL HPSKKFMNSC SFTNTNNNTQ TDMGQYNFVS QPFLDQQLLL  360
SPHLQFLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-72517614165NO APICAL MERISTEM PROTEIN
1ut4_B8e-72517614165NO APICAL MERISTEM PROTEIN
1ut7_A8e-72517614165NO APICAL MERISTEM PROTEIN
1ut7_B8e-72517614165NO APICAL MERISTEM PROTEIN
4dul_A8e-72517614165NAC domain-containing protein 19
4dul_B8e-72517614165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G054000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2167710.0AC216771.1 Populus trichocarpa clone POP051-N07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319143.30.0NAC transcription factor 47
SwissprotQ84TD61e-120NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A2K1Y1C60.0A0A2K1Y1C6_POPTR; Uncharacterized protein
STRINGPOPTR_0013s05080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66212750
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-116NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]