PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.013G046300.3 | ||||||||
Common Name | POPTR_0013s04340g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 898aa MW: 102033 Da PI: 6.3194 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.2 | 8.9e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Potri.013G046300.3 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.9 | 1.5e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Potri.013G046300.3 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.53E-12 | 10 | 53 | No hit | No description |
Pfam | PF13921 | 3.9E-13 | 10 | 70 | No hit | No description |
SuperFamily | SSF46689 | 7.55E-21 | 33 | 106 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 7.26E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 4.8E-60 | 407 | 656 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 898 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD DNYDPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TKGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDNRHR RRKRKGIDYN SEIPFEKRPP PGFYDVADED RPVEQPKFPT 240 TIEEIEGKKR MDIEAQLRKQ DAAKNKIAER QDAPSAILQA NKLNDPETVR KRSKLMLPAP 300 QISDHELEDI AKMGYASDLL AGSEELMEGS GATRALLANY AQTPRQGMTP LRTPQRTPAG 360 KGDAIMMEAE NLARLRESQT PLLGGENPDL HPSDFSGVTP KKREIQTPNP MLTPSATPGG 420 VGLTPRIGMT PSRDSFGITP KGTPIRDELH INEDMDIHDT EKLEQRRQAD LRRNLRSGLG 480 NLPQPKNEYQ IVIQLPPEDN EEPEEKIEED MSDRIAREKA AEEARLQALL RKRSKVLQRE 540 LPRPPTASLE LIRDSLLRAD GDKSSFVPPT SIEQADEMIR KELLALLEHD NAKYPLEEKP 600 SKEKKKGSKH PSKRSAASIP MIEDFEEDEL KQADNLIKVE AQYIRVAMGH EDESLDEFIE 660 AHKTCINDLM YFPTRNAYGL SSVAGNMEKL AALQNEFEIV KTRLEAEREK ALRLEKKVNV 720 LTQGYQIRAE RQLLPPIEVT LKQMDTAGTE LECFQALQRQ EQLAASHRIN GLWEEVQKQK 780 ELEQTLQRRY GDLVAELERI QQLIINYRAL AIQQEEIAAK NRALELAQAT AKQAAILNTE 840 LSEPMPSDEL GSSLPVGSSD EKASDQQMDI DSEKVHTQLP LKERVYKKEL MALPLLM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 801 | 3 | 799 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 801 | 3 | 799 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 801 | 3 | 799 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 801 | 3 | 799 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 801 | 3 | 799 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 801 | 3 | 799 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 801 | 3 | 799 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 801 | 3 | 799 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 801 | 3 | 799 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 801 | 3 | 799 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 801 | 3 | 799 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 801 | 3 | 799 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGIDNRHRRRKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.5266 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.013G046300.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024439015.1 | 0.0 | cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | B9I5N3 | 0.0 | B9I5N3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s04340.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Link Out ? help Back to Top | |
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Phytozome | Potri.013G046300.3 |
Entrez Gene | 7487702 |
Publications ? help Back to Top | |||
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