PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G046300.1
Common NamePOPTR_0013s04340g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 1071aa    MW: 119552 Da    PI: 5.017
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G046300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-13853248
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  Potri.013G046300.1  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                        78*****************************.************986 PP
2Myb_DNA-binding32.71.8e-1060103248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  Potri.013G046300.1  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                         68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.4E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
PfamPF139215.0E-131070No hitNo description
CDDcd001672.56E-121053No hitNo description
SuperFamilySSF466899.35E-2133106IPR009057Homeodomain-like
CDDcd116597.14E-3155106No hitNo description
Gene3DG3DSA:1.10.10.603.5E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129416.44358107IPR017930Myb domain
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
PfamPF118316.6E-60407656IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1071 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD DNYDPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TKGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDNRHR RRKRKGIDYN SEIPFEKRPP PGFYDVADED RPVEQPKFPT  240
TIEEIEGKKR MDIEAQLRKQ DAAKNKIAER QDAPSAILQA NKLNDPETVR KRSKLMLPAP  300
QISDHELEDI AKMGYASDLL AGSEELMEGS GATRALLANY AQTPRQGMTP LRTPQRTPAG  360
KGDAIMMEAE NLARLRESQT PLLGGENPDL HPSDFSGVTP KKREIQTPNP MLTPSATPGG  420
VGLTPRIGMT PSRDSFGITP KGTPIRDELH INEDMDIHDT EKLEQRRQAD LRRNLRSGLG  480
NLPQPKNEYQ IVIQLPPEDN EEPEEKIEED MSDRIAREKA AEEARLQALL RKRSKVLQRE  540
LPRPPTASLE LIRDSLLRAD GDKSSFVPPT SIEQADEMIR KELLALLEHD NAKYPLEEKP  600
SKEKKKGSKH PSKRSAASIP MIEDFEEDEL KQADNLIKVE AQYIRVAMGH EDESLDEFIE  660
AHKTCINDLM YFPTRNAYGL SSVAGNMEKL AALQNEFEIV KTRLEAEREK ALRLEKKVNV  720
LTQGYQIRAE RQLLPPIEVT LKQMDTAGTE LECFQALQRQ EQLAASHRIN GLWEEVQKQK  780
ELEQTLQRRY GDLVAELERI QQLIINYRAL AIQQEEIAAK NRALELAQAT AKQAAILNTE  840
LSEPMPSDEL GSSLPVGSSD EKASDQQMDI DSEKVHSARA TDTSLTNNVP SDPMPSDELG  900
SSLPVGSSDE KVSDQQMDVD SEKVHSARAT DTSFTNNVPS DEVRTTLVQG SGHEASGTCP  960
SGSDINNQNG VPVPTGDSIN RGDIISKVAV AVENKVNNDS VGVDAGDAVI ITEVMKDSSA  1020
AIEGESIQER VDGFATADVM QVSSGGDDKV NQLKDEGKLP VIVVDLTSSE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.028013799Cell division cycle 5-like protein
5xjc_L0.028013799Cell division cycle 5-like protein
5yzg_L0.028013799Cell division cycle 5-like protein
5z56_L0.028013799Cell division cycle 5-like protein
5z57_L0.028013799Cell division cycle 5-like protein
5z58_L0.028013799Cell division cycle 5-like protein
6ff4_L0.028013799Cell division cycle 5-like protein
6ff7_L0.028013799Cell division cycle 5-like protein
6icz_L0.028013799Cell division cycle 5-like protein
6id0_L0.028013799Cell division cycle 5-like protein
6id1_L0.028013799Cell division cycle 5-like protein
6qdv_O0.028013799Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KRRELKAAGIDNRHRRRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.52660.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G046300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439015.10.0cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLB9I5N30.0B9I5N3_POPTR; Uncharacterized protein
STRINGPOPTR_0013s04340.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40723354
Representative plantOGRP39481723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]