PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.013G039100.2 | ||||||||
Common Name | POPTR_0013s03670g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Trihelix | ||||||||
Protein Properties | Length: 627aa MW: 71172.1 Da PI: 6.8934 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 49.4 | 1.2e-15 | 101 | 159 | 2 | 65 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 W+++evlaL+++r++me+++ + We+vs+k++e gf+rs+++Ckek+e+ ++++ + Potri.013G039100.2 101 WSNDEVLALLRIRSSMETWFPEF-----TWEHVSRKLAEAGFKRSAEKCKEKFEEESRYFNISN 159 ********************998.....9**************************999887555 PP | |||||||
2 | trihelix | 95.8 | 4.1e-30 | 479 | 565 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlr..rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++evlaLi++r ++ ++ + +g++++plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql Potri.013G039100.2 479 RWPRDEVLALINLRCSLYNNNEdkEGSARAPLWERISQGMLESGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SIDSRTCPYFHQLS 565 8*************9766655522789*********************************************8.78889*******95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 19 | 97 | 154 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.33 | 99 | 152 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 7.7E-11 | 99 | 165 | No hit | No description |
SMART | SM00717 | 0.12 | 476 | 540 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 3.81E-24 | 478 | 545 | No hit | No description |
Pfam | PF13837 | 8.0E-20 | 478 | 565 | No hit | No description |
PROSITE profile | PS50090 | 6.632 | 479 | 538 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001158 | Molecular Function | enhancer sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 627 aa Download sequence Send to blast |
MFEGVPEQFH QFIASRTTSL PPPGLSFPLL QGSSNTTNFP SFYPYTTSSQ QVPLQPNLLH 60 PILHQGAPTN KDGEKQENNL VAMNMDQFER ERSMPELVNP WSNDEVLALL RIRSSMETWF 120 PEFTWEHVSR KLAEAGFKRS AEKCKEKFEE ESRYFNISNI NYNKNYRASF SELEEIYHGD 180 QNPHQEVTAG EKNKKIDKPG TEDEEQDKMR QNLEEETRID QTVGNQTDQD NNGKLALVEK 240 SKSNKRKREK KFEMFKRLCE DIVNTMMAQQ EEMHNKLLED IVKRDEEKVA KEEARKKLEM 300 DRINKELELR AHEQALANDR QATLIRFLKK FTSSDSSVEI LGEKIAPDPV NVPNSSNASS 360 SSSLVLEQNP NPASQTSNES QLKTATSSAT ALDHQKSTSI LAKTNTSWTE NQEPQNPTST 420 LARNIPQVPT TSSTLAVPAA PQNPNFLNSH SSTSGPPNTL PSHNKVQAKS TYKDDIGKRW 480 PRDEVLALIN LRCSLYNNNE DKEGSARAPL WERISQGMLE SGYKRSAKRC KEKWENINKY 540 FRKTKDVNKK RSIDSRTCPY FHQLSTLYNQ GTLVAPDNRS ASPENRSSLP ETRHSSSSQN 600 GTSNSTLHVG DGEKNMVQVP PLDFEF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 243 | 250 | NKRKREKK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00011 | PBM | Transfer from AT5G28300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.013G039100.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002319635.1 | 0.0 | trihelix transcription factor GTL2 | ||||
TrEMBL | B9I5E1 | 0.0 | B9I5E1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s03670.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28300.1 | 3e-91 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.013G039100.2 |
Entrez Gene | 7474599 |