PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G039100.1
Common NamePOPTR_0013s03670g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 648aa    MW: 73253.4 Da    PI: 6.6859
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G039100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.31.3e-15101159265
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 
                         W+++evlaL+++r++me+++ +       We+vs+k++e gf+rs+++Ckek+e+ ++++   +
  Potri.013G039100.1 101 WSNDEVLALLRIRSSMETWFPEF-----TWEHVSRKLAEAGFKRSAEKCKEKFEEESRYFNISN 159
                         ********************998.....9**************************999887555 PP
2trihelix95.74.3e-30479565186
            trihelix   1 rWtkqevlaLiearremeerlr..rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         rW+++evlaLi++r ++ ++ +  +g++++plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql 
  Potri.013G039100.1 479 RWPRDEVLALINLRCSLYNNNEdkEGSARAPLWERISQGMLESGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SIDSRTCPYFHQLS 565
                         8*************9766655522789*********************************************8.78889*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171997154IPR001005SANT/Myb domain
PfamPF138378.1E-1199165No hitNo description
PROSITE profilePS500906.3399152IPR017877Myb-like domain
SMARTSM007170.12476540IPR001005SANT/Myb domain
PfamPF138378.4E-20478565No hitNo description
CDDcd122033.64E-24478545No hitNo description
PROSITE profilePS500906.632479538IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MFEGVPEQFH QFIASRTTSL PPPGLSFPLL QGSSNTTNFP SFYPYTTSSQ QVPLQPNLLH  60
PILHQGAPTN KDGEKQENNL VAMNMDQFER ERSMPELVNP WSNDEVLALL RIRSSMETWF  120
PEFTWEHVSR KLAEAGFKRS AEKCKEKFEE ESRYFNISNI NYNKNYRASF SELEEIYHGD  180
QNPHQEVTAG EKNKKIDKPG TEDEEQDKMR QNLEEETRID QTVGNQTDQD NNGKLALVEK  240
SKSNKRKREK KFEMFKRLCE DIVNTMMAQQ EEMHNKLLED IVKRDEEKVA KEEARKKLEM  300
DRINKELELR AHEQALANDR QATLIRFLKK FTSSDSSVEI LGEKIAPDPV NVPNSSNASS  360
SSSLVLEQNP NPASQTSNES QLKTATSSAT ALDHQKSTSI LAKTNTSWTE NQEPQNPTST  420
LARNIPQVPT TSSTLAVPAA PQNPNFLNSH SSTSGPPNTL PSHNKVQAKS TYKDDIGKRW  480
PRDEVLALIN LRCSLYNNNE DKEGSARAPL WERISQGMLE SGYKRSAKRC KEKWENINKY  540
FRKTKDVNKK RSIDSRTCPY FHQLSTLYNQ GTLVAPDNRS ASPENRSSLP ETRHSSSSQN  600
GTSNSTLHVG DGEKNMVQRV TCEDGGVAAG MYCFASHENA GTELELL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243250NKRKREKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G039100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319635.10.0trihelix transcription factor GTL2
TrEMBLB9I5E10.0B9I5E1_POPTR; Uncharacterized protein
STRINGPOPTR_0013s03670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Representative plantOGRP1061159
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.13e-91Trihelix family protein