PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.013G025900.2 | ||||||||
Common Name | POPTR_0013s02680g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 321aa MW: 36324.1 Da PI: 7.1422 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41 | 3.4e-13 | 140 | 191 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ Potri.013G025900.2 140 QRMTHIAVERNRRKQMNEYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 191 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.75E-13 | 138 | 195 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.8E-14 | 138 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.01E-16 | 139 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.402 | 139 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-10 | 140 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.9E-10 | 145 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 321 aa Download sequence Send to blast |
MALEAAVFQQ DWFGHSSKEL YNFPGGNWSY DFGLDQNEED QDKSCSSYFL ENQTETFLHG 60 DWNPLPPPDS MVPPFSDLQL TCSNIPSLSE ASINAANGLM STTPTSDHHH HLGESSAMPA 120 TRVKRRRSRC KKNKEEIENQ RMTHIAVERN RRKQMNEYLS VLRSLMPESY VQRGDQASII 180 GGAINFVKEL EQKLQVLGAC KEMKEKPNGD DQQHVSSLPF SKFFIFPQYT TSSIHCESSA 240 GKDEKLMKSQ SAIADIEVTM VESHANLKIR SKRRPKQLLK VVSALHSMRL TVLHLNVSTV 300 DQIVLYSLSV KVIILEQFYQ * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 140 | 151 | RMTHIAVERNRR |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.11488 | 0.0 | stem |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.013G025900.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX986673 | 0.0 | JX986673.1 Populus tomentosa helix-loop-helix protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002319028.2 | 0.0 | transcription factor bHLH94 | ||||
TrEMBL | B9I7Y8 | 0.0 | B9I7Y8_POPTR; BHLH family protein | ||||
STRING | POPTR_0013s02680.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72210.1 | 1e-69 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.013G025900.2 |
Entrez Gene | 7473872 |