PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.013G025000.1 | ||||||||
Common Name | POPTR_0013s02580g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NF-YC | ||||||||
Protein Properties | Length: 237aa MW: 26720.2 Da PI: 6.0785 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 171.2 | 1.1e-53 | 56 | 159 | 2 | 102 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 +sfw++q i+k+tdfknh+lPlarikki+kadedvkmisaeaPv++++ace+fileltl+sw+h+eenkrrtl+k+diaaa+trtdif Potri.013G025000.1 56 RQSFWTNQykeIDKVTDFKNHSLPLARIKKIMKADEDVKMISAEAPVIFARACEMFILELTLQSWNHTEENKRRTLQKNDIAAAITRTDIF 146 589****999999****************************************************************************** PP NF-YC 90 dflvdivprdelk 102 dflvdivpr+++k Potri.013G025000.1 147 DFLVDIVPREDMK 159 *********9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.71E-33 | 45 | 149 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.9E-21 | 77 | 140 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.3E-37 | 78 | 155 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MDQQGYGTNP YQPNQMPAAS NPGSVPGQPA GAQLEQHQLA YQQIHQQQQQ QLQQQRQSFW 60 TNQYKEIDKV TDFKNHSLPL ARIKKIMKAD EDVKMISAEA PVIFARACEM FILELTLQSW 120 NHTEENKRRT LQKNDIAAAI TRTDIFDFLV DIVPREDMKD EVLASIPRGT MPVGGPVDAL 180 PYCYMPHPHA PQVGTPGMIM GKPVTDPAMY AQQSHPYMAQ HMWPQGPEQQ QSPSDQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 6e-61 | 62 | 155 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 133 | RRTLQKN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.17882 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11867211, ECO:0000269|PubMed:17322342}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.013G025000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002319553.1 | 1e-176 | nuclear transcription factor Y subunit C-3 | ||||
Refseq | XP_024439863.1 | 1e-176 | nuclear transcription factor Y subunit C-3 | ||||
Swissprot | Q8L4B2 | 3e-88 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | B9I7X7 | 1e-175 | B9I7X7_POPTR; NF-YC family protein | ||||
STRING | POPTR_0013s02580.1 | 1e-176 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1257 | 34 | 108 | Representative plant | OGRP315 | 17 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 2e-86 | nuclear factor Y, subunit C9 |
Link Out ? help Back to Top | |
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Phytozome | Potri.013G025000.1 |
Entrez Gene | 7473301 |