PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.013G020500.1

Common Name

POPTR_0013s02120g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB_related

Protein Properties

Length: 1123aa MW: 125548 Da PI: 9.7503

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.013G020500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24	9e-08	46	82	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++ + +++++a + +G + Wk++a+++ +R+ +++ Potri.013G020500.1 46 QWSKADLQRFYKAYRDHGQN-WKKVAAEVR-NRSVEMVE 82 6***************88.*****.*99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0018	43	91	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.16E-8	43	90	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.5E-4	46	84	IPR009057	Homeodomain-like
Pfam	PF00249	2.0E-6	46	85	IPR001005	SANT/Myb domain
CDD	cd00167	7.55E-5	47	81	No hit	No description
Pfam	PF06584	2.0E-32	616	716	IPR033471	DIRP domain
SMART	SM01135	2.4E-58	616	717	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1123 aa Download sequence Send to blast
MAPTRKKSVN KRFLNEVSPE KEVKSSSKNK QQANGKKKLS DKLGTQWSKA DLQRFYKAYR 60 DHGQNWKKVA AEVRNRSVEM VETLYNMNRA YLSLPEGTAS VVGLIAMMTD HYSVLEASES 120 ERESNEVPGV LRKLQKRKQP KVQLSASKED LQQSHMVAST DGCLSFLKIG YGRPLHSVGK 180 RTPRFPVSHQ LKKDENYVSP KKKHRKSEIN ADDNDDEHVA ALTLTETLQR GDSAQVPQTP 240 HRRTEHMKSS PVQSWDKMPE SSPENLCDAS IYEHWSESGT GRGGPDLAYV RDASSLAEME 300 GIGTVEVHRK GKKFYGKKVR VEKIGNSQSD GGGEACSGTE EEQKVRTLKG KVEIEMSNAK 360 IDETSCRGQR KRSKKLFSDD KHDDFIGLQT LALVSAMEFE SSAQLDEERT AQTEDDKCSV 420 PESASTSHHR ERTKLSRQKE KAISGVDRIT SRKSKLGRYP PISAKPVSEA NKQPQSSSNG 480 TLKRKREALV SKVLDEEEIT PVVKGRHSGQ ISSPSKQLNS LELPEGSSFS GDQKNVPNDL 540 ATAQVPVASQ VILPTRKGSR RKMDLKRAMI PKVGKSSVNI RKNQINRQDG AIHLKDKLSC 600 SLSSPMVRRW CTFEWFYSAV DYPWFAKREF VEYLNHVGLG HIPRLTRVEW GVIRSSLGRP 660 RRFSERFLHE EREKLQQYRE SVRKHYMELR MGLREGLPTD LARPLSVGQR VIAIHPKTRE 720 LHDGGVLTVD HDQCRVQFDR AELGVEFVKD IDCMPSNPLD NMPEALRRQR ISVLPRELLV 780 NGKSNAGVFT ASEHLRSALS PKNALVKQAQ VEVNCAIPLA KGVSTDIVNV QGVCRQPSMV 840 AQIQAKESDI QALSELNRAL DRKEAWLMEL KNTNNDIMEN PKNGDNYLKY SEPLKNLAAV 900 LASSALLHLR QHNTYPINNL PGWLKPPANS CFSGMPRPHT SSFVSQESGS AVLEIVRGSR 960 LKAHNMVDVA VQAISSMKEG EDTFVRIGEA LDSMDRRHLG SEYRVQMIRA PEGVSGGLRL 1020 QNQLILSTSE PQVNSNASRP QSNDSDKTET VIPSDLISSC VAALLMIQTC SERQYPPSDV 1080 AQIIDSAVTS LQPCCPQNLP IYREIQMCMG RIKTQILALI PT*

Sequence ? help Back to Top

Protein Sequence Length: 1123 aa Download sequence Send to blast

MAPTRKKSVN KRFLNEVSPE KEVKSSSKNK QQANGKKKLS DKLGTQWSKA DLQRFYKAYR  60
DHGQNWKKVA AEVRNRSVEM VETLYNMNRA YLSLPEGTAS VVGLIAMMTD HYSVLEASES  120
ERESNEVPGV LRKLQKRKQP KVQLSASKED LQQSHMVAST DGCLSFLKIG YGRPLHSVGK  180
RTPRFPVSHQ LKKDENYVSP KKKHRKSEIN ADDNDDEHVA ALTLTETLQR GDSAQVPQTP  240
HRRTEHMKSS PVQSWDKMPE SSPENLCDAS IYEHWSESGT GRGGPDLAYV RDASSLAEME  300
GIGTVEVHRK GKKFYGKKVR VEKIGNSQSD GGGEACSGTE EEQKVRTLKG KVEIEMSNAK  360
IDETSCRGQR KRSKKLFSDD KHDDFIGLQT LALVSAMEFE SSAQLDEERT AQTEDDKCSV  420
PESASTSHHR ERTKLSRQKE KAISGVDRIT SRKSKLGRYP PISAKPVSEA NKQPQSSSNG  480
TLKRKREALV SKVLDEEEIT PVVKGRHSGQ ISSPSKQLNS LELPEGSSFS GDQKNVPNDL  540
ATAQVPVASQ VILPTRKGSR RKMDLKRAMI PKVGKSSVNI RKNQINRQDG AIHLKDKLSC  600
SLSSPMVRRW CTFEWFYSAV DYPWFAKREF VEYLNHVGLG HIPRLTRVEW GVIRSSLGRP  660
RRFSERFLHE EREKLQQYRE SVRKHYMELR MGLREGLPTD LARPLSVGQR VIAIHPKTRE  720
LHDGGVLTVD HDQCRVQFDR AELGVEFVKD IDCMPSNPLD NMPEALRRQR ISVLPRELLV  780
NGKSNAGVFT ASEHLRSALS PKNALVKQAQ VEVNCAIPLA KGVSTDIVNV QGVCRQPSMV  840
AQIQAKESDI QALSELNRAL DRKEAWLMEL KNTNNDIMEN PKNGDNYLKY SEPLKNLAAV  900
LASSALLHLR QHNTYPINNL PGWLKPPANS CFSGMPRPHT SSFVSQESGS AVLEIVRGSR  960
LKAHNMVDVA VQAISSMKEG EDTFVRIGEA LDSMDRRHLG SEYRVQMIRA PEGVSGGLRL  1020
QNQLILSTSE PQVNSNASRP QSNDSDKTET VIPSDLISSC VAALLMIQTC SERQYPPSDV  1080
AQIIDSAVTS LQPCCPQNLP IYREIQMCMG RIKTQILALI PT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	138	RKLQKRKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.013G020500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC184086	1e-122	AC184086.2 Populus trichocarpa clone Pop1-58C2, complete sequence.
GenBank	AC214688	1e-122	AC214688.1 Populus trichocarpa clone ACSB193-J04, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002319534.3	0.0	protein ALWAYS EARLY 2 isoform X1
TrEMBL	A0A2K1XZN1	0.0	A0A2K1XZN1_POPTR; Uncharacterized protein
STRING	POPTR_0013s02120.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69
Representative plant	OGRP2479	13	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Potri.013G020500.1
Entrez Gene	7473283