PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.013G014000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | FAR1 | ||||||||
Protein Properties | Length: 149aa MW: 16491.4 Da PI: 8.0801 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 32.5 | 2.9e-10 | 80 | 130 | 4 | 55 |
FAR1 4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtr 55 ++YAk vGF+ r+++s+k k++g i + +vCskeg ++++ kk +k rr++ Potri.013G014000.1 80 KSYAKAVGFQWRTRTSRKDKNKGGICTVSMVCSKEGANKSRGKK-NKLRRPT 130 68***************************************999.4444433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.7E-7 | 80 | 128 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MDRLLIGHEI GLNATPFLER QHLSTSNDGS GVEEEDEEEG KEKEEAGHSS LPNGTENPLT 60 QSPYDGQVFR CLQALVPHLK SYAKAVGFQW RTRTSRKDKN KGGICTVSMV CSKEGANKSR 120 GKKNKLRRPT SKEGANNFFL EKGWLVED* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.013G014000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011036894.1 | 6e-25 | PREDICTED: histone acetyltransferase KAT6B-like | ||||
TrEMBL | A0A2K1XZD6 | 1e-106 | A0A2K1XZD6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s02350.1 | 2e-24 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 6e-07 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Potri.013G014000.1 |