PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.013G001300.2 | ||||||||
Common Name | POPTR_0013s00310g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 714aa MW: 76874.9 Da PI: 5.8621 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.7 | 3.2e-16 | 449 | 495 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq Potri.013G001300.2 449 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 495 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.24E-20 | 442 | 508 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.349 | 445 | 494 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.55E-17 | 448 | 499 | No hit | No description |
Pfam | PF00010 | 1.3E-13 | 449 | 495 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-20 | 449 | 503 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-17 | 451 | 500 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 714 aa Download sequence Send to blast |
MPLSELLYRM AKGKTDSSQE KNPACSTDLS FVPENDFGEL IWENGQIQYS RARKIQTCNS 60 LPPKIRDKDI GNGTNTKTGK FGTMESTLNE LLAVPAVEVR ANQDDDMVPW LNYPLDEPLQ 120 HDYCSDFLPE LSGVTVNEHS SQSNFPSFDK RSCNQSITDS HTVSVHNGLN LEQGDVVMNS 180 SAGDIDAKRP RTSASQLYPS SSEQCKTSFP FFRSRDSTKK DDSTSNAVHH VIAPDSIRAP 240 TSGGGFPSIK MQKQVPAPSP INSSLINFSH FARPAALVKA NLQNVGMRAS SGTSSMERMQ 300 NKDKGSIGLP KETDSHCRPN MMSSKVEVKP TEVKPAEGSV PAELPEEMSQ EGDSKSDRNC 360 HQNFGESAIK GLEDVEKTTE PLVASSSVGS GNSAERPSDD PTENLKRKHR DTEESEGPSE 420 DAEEESVGAK KPASARAGNG SKRGRAAEVH NLSERRRRDR INEKMRALQE LIPNCNKVDK 480 ASMLDEAIEY LKTLQLQVQI MSMGAGMYMP SMMLPPGMPH MHAAHMGQFL PMGVGMGMGF 540 RMGMPDMNGG YSGCPMYQVP PMHGAHFPGS QMSGPSALHG MGGPSLQMFG LSGQGLPMSF 600 PRAPLMPMSG GPPPKTNREP NACGVVGPMD NLDSATASSS KDAIQNINSQ VMQNNVANRS 660 MNQTSSQCQA TNECFEQPAF AQNNGEGSEV AESGVLKSAG GTDITPSRAT GCD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 453 | 458 | ERRRRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.013G001300.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214596 | 0.0 | AC214596.1 Populus trichocarpa clone POP018-C13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024438998.1 | 0.0 | transcription factor PIF3 isoform X4 | ||||
TrEMBL | B9I6B9 | 0.0 | B9I6B9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s00310.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 1e-62 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Potri.013G001300.2 |
Entrez Gene | 7478869 |