PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G001300.1
Common NamePOPTR_0013s00310g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 720aa    MW: 77620.8 Da    PI: 5.7494
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G001300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.2e-16455501455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Potri.013G001300.1 455 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 501
                         6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.26E-20448514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349451500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.59E-17454505No hitNo description
Gene3DG3DSA:4.10.280.103.1E-20455509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-13455501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17457506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MPLSELLYRM AKGKTDSSQE KNPACSTDLS FVPENDFGEL IWENGQIQYS RARKIQTCNS  60
LPPKIRDKDI GNGTNTKTGK FGTMESTLNE LLAVPAVEVR ANQDDDMVPW LNYPLDEPLQ  120
HDYCSDFLPE LSGVTVNEHS SQSNFPSFDK RSCNQSITDS HTVSVHNGLN LEQGDVVMNS  180
SAGDIDAKRP RTSASQLYPS SSEQCKTSFP FFRSRDSTKK DDSTSNAVHH VIAPDSIRAP  240
TSGGGFPSIK MQKQVPAPSP INSSLINFSH FARPAALVKA NLQNVGMRAS SGTSSMERMQ  300
NKDKGSIGLP KETDSHCRPN MMSSKVEVKP TEVKPAEGSV PAELPEEMSQ EGDSKSDRNC  360
HQNFGESAIK GLEDVEKTTE PLVASSSVGS GNSAERPSDD PTENLKRKHR DTEESEGPSE  420
EIIYVQDAEE ESVGAKKPAS ARAGNGSKRG RAAEVHNLSE RRRRDRINEK MRALQELIPN  480
CNKVDKASML DEAIEYLKTL QLQVQIMSMG AGMYMPSMML PPGMPHMHAA HMGQFLPMGV  540
GMGMGFRMGM PDMNGGYSGC PMYQVPPMHG AHFPGSQMSG PSALHGMGGP SLQMFGLSGQ  600
GLPMSFPRAP LMPMSGGPPP KTNREPNACG VVGPMDNLDS ATASSSKDAI QNINSQVMQN  660
NVANRSMNQT SSQCQATNEC FEQPAFAQNN GEGSEVAESG VLKSAGGTDI TPSRATGCD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1459464ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G001300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2145960.0AC214596.1 Populus trichocarpa clone POP018-C13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438996.10.0transcription factor PIF3 isoform X2
TrEMBLB9I6B90.0B9I6B9_POPTR; Uncharacterized protein
STRINGPOPTR_0013s00310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-66phytochrome interacting factor 3