PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G145800.1
Common NamePOPTR_0012s12760g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 656aa    MW: 71623 Da    PI: 7.0187
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G145800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74.2e-08251271526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f++ GtC+ Gd+C +aHg
  Potri.012G145800.1 251 PCPEFRK-GTCQKGDSCEYAHG 271
                         8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.01E-1328141IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.2E-1542165IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00336191IPR002110Ankyrin repeat
PROSITE profilePS5029713.41661136IPR020683Ankyrin repeat-containing domain
PfamPF127967.1E-961130IPR020683Ankyrin repeat-containing domain
CDDcd002047.23E-1463159No hitNo description
SMARTSM002480.05496128IPR002110Ankyrin repeat
PROSITE profilePS500889.05796131IPR002110Ankyrin repeat
SMARTSM003562.1E-5246272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.666246273IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5251271IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-5251273IPR000571Zinc finger, CCCH-type
SMARTSM0035637281304IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.869281305IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MEDKSCGQKD NLLYKCSVLL ELSASDDLAG FKIEVEQKGL DIDGANYWYG RRIGSKKMGF  60
EERTPLMIAA MFGCTNVLKY IIETGKVNVN RACGSDKVTA LHYAVAGCVV SSVGIVKLLL  120
DAFADPNSAD ANGNKPGDIF ATSSKCMCNS RKKLIELLLK GQNLSEDEEE KLVIMPQLAK  180
EGTEKKEYPL DVTLPDINNG IYGTDEFRMY SFKVKPCSRA YSHDWTECPF VHPGENARRR  240
DPKKYPYSCV PCPEFRKGTC QKGDSCEYAH GVFESWLHPA QYRTRLCKDE TGCARKVCFF  300
AHKPEDLRPV YASTGSAMTT LSPLALGSSS FPLPATPTPP MSPLAVASSS PKSGSLWQNK  360
VSLTQPALQL PGSRLKTAFC ARDLNLEIEL LGLENYSSQL QQQQQQLRGE IIEMSGLSSP  420
SHWSNRIADL KPTNLDDVFG SLDPSLMSPL QGVSLNASTQ TQLHSPNGLQ IRQNMNQLHS  480
SYPAANLSSS PARNPSTYGF DTSTAVAAAV MNSRSSAFAK RSQSFIDRGA VPNHLGLTAA  540
ANSVSTMPSN LPDWSSPNGK LDWGFQGDEL NKLKKSASFG FQSSNNPAAT TAAYVTASHV  600
DEPDVSWVNS LVKDVPPAGS TIFYAEKQYS LGKRVCESLP PWIEQIYLEQ EQMVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.89060.0bud| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G145800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318200.30.0zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A2K1YDL60.0A0A2K1YDL6_POPTR; Uncharacterized protein
STRINGPOPTR_0012s12760.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein