PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G140700.1
Common NamePOPTR_0012s13240g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 299aa    MW: 33680.2 Da    PI: 6.664
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G140700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-181461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd+llv++++++G g+W++ ++  g+ R++k+c++rw +yl
  Potri.012G140700.1 14 KGPWTPEEDQLLVQYIQKHGLGCWRSLPKNAGLLRCGKSCRLRWTNYL 61
                        79******************************99************97 PP
2Myb_DNA-binding42.61.4e-1367112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++++ E+  +v+++ +lG++ W+  a+ ++ gRt++++k++w+++l
  Potri.012G140700.1  67 RGPFSPAEEATIVHLHGMLGNK-WAYMASQLP-GRTDNEIKNFWNTHL 112
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-25564IPR009057Homeodomain-like
PROSITE profilePS5129425.072965IPR017930Myb domain
SuperFamilySSF466897.86E-3012108IPR009057Homeodomain-like
SMARTSM007171.3E-151363IPR001005SANT/Myb domain
PfamPF002493.0E-171461IPR001005SANT/Myb domain
CDDcd001671.37E-121661No hitNo description
Gene3DG3DSA:1.10.10.603.8E-2565116IPR009057Homeodomain-like
SMARTSM007171.0E-1166114IPR001005SANT/Myb domain
PROSITE profilePS5129417.41766116IPR017930Myb domain
PfamPF002498.4E-1267112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGRVPCCDKD EVKKGPWTPE EDQLLVQYIQ KHGLGCWRSL PKNAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF SPAEEATIVH LHGMLGNKWA YMASQLPGRT DNEIKNFWNT HLKKRLTSIG  120
PKLQINQSSS SSEPINIKCK SPSARHMVQW ESARVEAEAR LSKQSLLIKP TSTAKSRPDI  180
FLQLWKSEVG ETFRITEEKY GKTCESLVSD TPPSIKNESV FLDDTVSPKP FKTTTFMDTT  240
QEQEDTCKPN EEVMTVSDSI GSNEFADSTD TALKLLLDFP GGNDMEFIGE ESEFFQLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-271111624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.111660.0bud| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G140700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1474410.0EF147441.1 Populus trichocarpa clone WS01231_B05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030104.10.0PREDICTED: transcription repressor MYB6-like
TrEMBLA9PGF10.0A9PGF1_POPTR; Uncharacterized protein
STRINGPOPTR_0012s13240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-93myb domain protein 17
Publications ? help Back to Top
  1. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]