PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G140500.1
Common NamePOPTR_0012s13260g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 326aa    MW: 36868.7 Da    PI: 8.3203
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G140500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-164996148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEd++l  +v q+G g+W++++   g+ Rt+k+c++rw +yl
  Potri.012G140500.1 49 KGLWSPEEDQRLGSYVFQHGHGCWSSVPINAGLQRTGKSCRLRWINYL 96
                        678*******************************************97 PP
2Myb_DNA-binding57.43.3e-18102147148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+++t+E+e ++ ++++lG++ W+ Ia++++ gRt++++k++w++yl
  Potri.012G140500.1 102 RGAFSTDEEETILTLHRMLGNK-WSQIAQHLP-GRTDNEIKNHWHSYL 147
                         89********************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1964496IPR017930Myb domain
SuperFamilySSF466895.5E-2946143IPR009057Homeodomain-like
SMARTSM007172.3E-104898IPR001005SANT/Myb domain
PfamPF002492.0E-144996IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-2150103IPR009057Homeodomain-like
CDDcd001671.03E-95296No hitNo description
PROSITE profilePS5129427.697151IPR017930Myb domain
SMARTSM007174.7E-16101149IPR001005SANT/Myb domain
PfamPF002491.5E-16102147IPR001005SANT/Myb domain
CDDcd001671.61E-11104147No hitNo description
Gene3DG3DSA:1.10.10.601.0E-25104151IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MPKAFIASIT KSKTLFLLYK SPILLIIGVL GEMGCKSSDK PKPKLRHRKG LWSPEEDQRL  60
GSYVFQHGHG CWSSVPINAG LQRTGKSCRL RWINYLRPGL KRGAFSTDEE ETILTLHRML  120
GNKWSQIAQH LPGRTDNEIK NHWHSYLKKK LFKAEGMESP NKTQSASSNS DNMDLSPSPK  180
RLKMQSPESS MNMEKPSTDI DRPVLPRMFD YLKEPNRSSL LPKVMFAEWL SLDSFASSGE  240
PVVSKSTFDH NPSFQDTSFM HHYLLEEGAF GGDYQNSLSD GSSGDIFSSE FKFESQSPGN  300
EFDFSSGEDL CREFNFRNIG DVMYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-25491514105C-Myb DNA-Binding Domain
1msf_C5e-25491514105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G140500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ9020401e-85HQ902040.2 Populus balsamifera MYB transcription factor (MYB19) gene, partial cds.
GenBankHQ9020411e-85HQ902041.2 Populus deltoides MYB transcription factor (MYB19) gene, partial cds.
GenBankJQ9297221e-85JQ929722.1 Populus trichocarpa MYB transcription factor (MYB19) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318818.30.0transcription factor LAF1
TrEMBLB9I4990.0B9I499_POPTR; Uncharacterized protein
STRINGPOPTR_0012s13260.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.12e-59myb domain protein 19