PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.012G135900.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TCP

Protein Properties

Length: 358aa MW: 38101.4 Da PI: 7.4281

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.012G135900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.6	1.1e-34	80	149	4	73
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 +k+ +++hTkv+gR+RRvR++a+caar+F+L++eLG+++ ++ti WLl+ a+pai+++tgt++ +a ++ Potri.012G135900.1 80 AKRNRKDRHTKVEGRGRRVRMPATCAARIFQLTRELGHKSEGETIRWLLEHAEPAIIAATGTGTVPAIAV 149 78999*********************************************************77777333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.5E-29	83	160	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.831	84	138	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MDSPTHHHHR TIEKIDKEQS ITTANLSSQP ELKDETLTDP EESQEFEEHN NNKRINNGSS 60 SSSLVLHQVQ RKQQQVVIAA KRNRKDRHTK VEGRGRRVRM PATCAARIFQ LTRELGHKSE 120 GETIRWLLEH AEPAIIAATG TGTVPAIAVS VNGTLKIPTE TPARTTAEAD IDADGLVPNK 180 KRRRPCNSDF VDLAEAAHQN SVSSGLAPIA STSPQGLVPI WPIGTLLFPQ GSSVGVGESN 240 QAQFWAFPAA STTPFFNMAA KPISSLVSAV QPGVQSAGNV GVGFGGGMSP SNNIGSMSSS 300 SSGSSTTSAS TGGGGGGSQM LRDFSLEIYD KKELQYLGHP VNHDHQQAPC SESCILR*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MDSPTHHHHR TIEKIDKEQS ITTANLSSQP ELKDETLTDP EESQEFEEHN NNKRINNGSS  60
SSSLVLHQVQ RKQQQVVIAA KRNRKDRHTK VEGRGRRVRM PATCAARIFQ LTRELGHKSE  120
GETIRWLLEH AEPAIIAATG TGTVPAIAVS VNGTLKIPTE TPARTTAEAD IDADGLVPNK  180
KRRRPCNSDF VDLAEAAHQN SVSSGLAPIA STSPQGLVPI WPIGTLLFPQ GSSVGVGESN  240
QAQFWAFPAA STTPFFNMAA KPISSLVSAV QPGVQSAGNV GVGFGGGMSP SNNIGSMSSS  300
SSGSSTTSAS TGGGGGGSQM LRDFSLEIYD KKELQYLGHP VNHDHQQAPC SESCILR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.012G135900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024437999.1	1e-179	transcription factor TCP19
Swissprot	Q9LT89	2e-76	TCP19_ARATH; Transcription factor TCP19
TrEMBL	A0A2K1YD48	0.0	A0A2K1YD48_POPTR; Uncharacterized protein
STRING	POPTR_0012s13700.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2118	30	86
Representative plant	OGRP3178	11	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	1e-70	TCP family protein

Link Out ? help Back to Top
Phytozome	Potri.012G135900.1