PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G133800.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARR-B
Protein Properties Length: 659aa    MW: 71939.8 Da    PI: 9.0559
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G133800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.11.9e-23213266155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kp+++Wt+ LH+rF+ a++++ G +kA+Pk+ile+m+v gL++e+++SHLQkYR+
  Potri.012G133800.1 213 KPKVVWTNSLHNRFLLALNHI-GLDKAVPKRILECMSVRGLSRENIASHLQKYRI 266
                         79*******************.********************************6 PP
2Response_reg57.48e-20191341108
                         EEEESSSHHHHHHHHHHHH........HTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTT CS
        Response_reg   1 vlivdDeplvrellrqale........kegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahg 81 
                         +livdD+ + ++++   l+        + ++ +v +++++ +al +l+ k+  +Dl++ D+ mp+m+G+el k+ +ee  klp+i++++ +
  Potri.012G133800.1  19 ILIVDDDSTSLSVVSATLKtvsykdnrNLEL-IVVTVKKPFDALSILRLKKglFDLVVSDLHMPEMNGMELQKQVEEEF-KLPVIIMSSDE 107
                         89****************9666544222333.899************888889**********************9999.*********** PP

                         THHHHHHHHHTTESEEEESS--HHHHH CS
        Response_reg  82 eeedalealkaGakdflsKpfdpeelv 108
                         +++ + + l+ Ga  +++Kp ++ +l 
  Potri.012G133800.1 108 SKNVISRSLEGGAAFYIVKPANKVDLK 134
                         ********************9998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.0E-2711140No hitNo description
SuperFamilySSF521729.82E-2415142IPR011006CheY-like superfamily
SMARTSM004481.5E-1917137IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011032.1718141IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.9E-1719135IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.10E-1820136No hitNo description
Gene3DG3DSA:1.10.10.604.1E-24210270IPR009057Homeodomain-like
SuperFamilySSF466892.33E-17211270IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-24213266IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MASTQSSNAL SSSLPKIHIL IVDDDSTSLS VVSATLKTVS YKDNRNLELI VVTVKKPFDA  60
LSILRLKKGL FDLVVSDLHM PEMNGMELQK QVEEEFKLPV IIMSSDESKN VISRSLEGGA  120
AFYIVKPANK VDLKNVWHYA VAIKTGNSLS IKEIEGSREP SYSSTLVERL SLEDVNSATS  180
INDEKRYRKN GRKEERKSTK DDQEVDSQPA SKKPKVVWTN SLHNRFLLAL NHIGLDKAVP  240
KRILECMSVR GLSRENIASH LQKYRIFLKK VAERGGCSSK NLSGRDDLRT NFAPSQPFMM  300
FKNVQQEYSQ RVTRASIQPG LGGNTIPALG GSSFRNLHSP NQQAPSNNSI LQSPYGQSRL  360
FGNANSANQA NQIRSGLESN YSIGENMPSY GGVIPNGLTH GTRPMQMYHP QNQARSYLQN  420
FGSPPLINRF GAVGIQATNY GSGVGDIGII NNSLNTNNNY VGIRVTTDGR LIGSGQMQLN  480
TNELSNGFSD GGHPCLMNWA RNGNMNVASI GFNIASENYV ARRGSFSAGF EGANQFFPPT  540
PFTSVYHGNS TPMLLPPPPP QHQLGLGNGG QNDFVFGLMN NSPPILGGNS NQQPQIGEGE  600
PNVSDMLLEP TNNPPAYQLP QGVAQMSTPL HELLTPDFLN SLHIDDNTPR NEQPSSQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-22210272264ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G133800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318255.30.0putative two-component response regulator ARR21
TrEMBLA0A2K1YD360.0A0A2K1YD36_POPTR; Uncharacterized protein
STRINGPOPTR_0012s13900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101422534
Representative plantOGRP1212546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.12e-49response regulator 21