PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G133000.1
Common NamePOPTR_0012s13980g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 215aa    MW: 24638.4 Da    PI: 9.2234
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G133000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.77.2e-29959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien + rqvtfskR+ng+lKKA+ELS+LCdaevaviifs++g+l+ ++s
  Potri.012G133000.1  9 KRIENATSRQVTFSKRKNGLLKKAYELSILCDAEVAVIIFSQKGTLFKFAS 59
                        79**********************************************986 PP
2K-box72.21.6e-2483173999
               K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                           e+  e+l+qe+a++ k+ie ++  qR+llG+dL+s+s +eL+ + +qLe sl++iR++K++l++eqie+lq ke+ l  en +L+k+ +
  Potri.012G133000.1  83 DVEQSKEQLRQESANMAKKIEIIEILQRKLLGQDLDSCSPEELHDIDNQLEISLSNIRARKTQLFKEQIEQLQAKERLLLMENARLTKQCD 173
                         44666889*******************************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.006161IPR002100Transcription factor, MADS-box
CDDcd002653.81E-37279No hitNo description
PRINTSPR004046.3E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-29375IPR002100Transcription factor, MADS-box
PfamPF003198.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-303859IPR002100Transcription factor, MADS-box
PfamPF014863.3E-2486172IPR002487Transcription factor, K-box
PROSITE profilePS5129714.89988178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MARGKVQLKR IENATSRQVT FSKRKNGLLK KAYELSILCD AEVAVIIFSQ KGTLFKFASI  60
DQIQKTIDRY RKNAKQLHTD RIDVEQSKEQ LRQESANMAK KIEIIEILQR KLLGQDLDSC  120
SPEELHDIDN QLEISLSNIR ARKTQLFKEQ IEQLQAKERL LLMENARLTK QCDAQPLQQS  180
TQSNQVVSYL TSCSKSSDIV ETDLYIGLPH MRCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-19161161MEF2 CHIMERA
6byy_B5e-19161161MEF2 CHIMERA
6byy_C5e-19161161MEF2 CHIMERA
6byy_D5e-19161161MEF2 CHIMERA
6bz1_A5e-19161161MEF2 CHIMERA
6bz1_B5e-19161161MEF2 CHIMERA
6bz1_C5e-19161161MEF2 CHIMERA
6bz1_D5e-19161161MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}.
UniprotTISSUE SPECIFICITY: Expressed in quiescent center (QC) cells of root tips (PubMed:18162590, PubMed:21689171). Expressed at the base of the petiole of cotyledons and leaves, in flower buds, petals, sepals and abscission zone of flowers and siliques. {ECO:0000269|PubMed:18162590, ECO:0000269|PubMed:21689171}.
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G133000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318261.11e-155MADS-box protein AGL42
RefseqXP_024437836.11e-155MADS-box protein AGL42
SwissprotQ9FIS11e-71AGL42_ARATH; MADS-box protein AGL42
TrEMBLB9I4G51e-153B9I4G5_POPTR; Uncharacterized protein
STRINGXP_002510866.15e-88(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.36e-74AGAMOUS-like 42