PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G132600.1
Common NamePOPTR_0012s14020g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 27068.9 Da    PI: 8.5998
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G132600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.71.7e-29959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        +rienk+ rqvtfskRrng+lKKA+ELS LCdaeva+iifss+gkl+e+ss
  Potri.012G132600.1  9 ERIENKISRQVTFSKRRNGLLKKAYELSLLCDAEVALIIFSSHGKLFEFSS 59
                        69***********************************************96 PP
2K-box92.86e-31771725100
               K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                         ++++  e+ + +l+qe+++L+++ e+Lqr+qR++lGedLe+L +keL+++e+qL+k l++ R++K++ll++++eel+ ke+el+eenk+L+
  Potri.012G132600.1  77 QDTNIPEEGSHNLYQEVSRLRAKCETLQRSQRNFLGEDLEPLAFKELEKIEKQLDKTLSQARQRKTQLLFDKMEELRLKEQELEEENKQLK 167
                         55667888999******************************************************************************** PP

               K-box  96 kklee 100
                         +klee
  Potri.012G132600.1 168 TKLEE 172
                         **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.441161IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-38160IPR002100Transcription factor, MADS-box
CDDcd002657.12E-42278No hitNo description
SuperFamilySSF554552.88E-32283IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-30323IPR002100Transcription factor, MADS-box
PfamPF003192.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.01886176IPR002487Transcription factor, K-box
PfamPF014861.1E-2686170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRGKVVLER IENKISRQVT FSKRRNGLLK KAYELSLLCD AEVALIIFSS HGKLFEFSSI  60
DMNSILQRYR QCCYSTQDTN IPEEGSHNLY QEVSRLRAKC ETLQRSQRNF LGEDLEPLAF  120
KELEKIEKQL DKTLSQARQR KTQLLFDKME ELRLKEQELE EENKQLKTKL EEVVLRLPAI  180
QGVGDPSKAD GYKHSEPLPT LQMGHHQFVY QEQAFDARTN IPGKSNPTPR WLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-22169169MEF2C
5f28_B2e-22169169MEF2C
5f28_C2e-22169169MEF2C
5f28_D2e-22169169MEF2C
6byy_A2e-22169169MEF2 CHIMERA
6byy_B2e-22169169MEF2 CHIMERA
6byy_C2e-22169169MEF2 CHIMERA
6byy_D2e-22169169MEF2 CHIMERA
6bz1_A3e-22169169MEF2 CHIMERA
6bz1_B3e-22169169MEF2 CHIMERA
6bz1_C3e-22169169MEF2 CHIMERA
6bz1_D3e-22169169MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G132600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006377087.11e-173truncated transcription factor CAULIFLOWER A isoform X1
SwissprotQ8LLR11e-81MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLU5FXL41e-171U5FXL4_POPTR; Uncharacterized protein
STRINGPOPTR_0012s14020.19e-86(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.17e-58AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]