PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.012G132300.1

Common Name

POPTR_0012s14050g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 995aa MW: 111294 Da PI: 7.1743

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.012G132300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	25.1	4.4e-08	229	283	21	75
trihelix 21 lrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 + rgk ++ + +ev++++ ++ ++r +k+ kw+n+ ++++k+ e+e++ + e+ Potri.012G132300.1 229 STRGKTRADKDREVAEFLNRHDVHRDAKTAGTKWDNMLGEFRKVYEWERGDKREQ 283 56788999999**************************************974433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	1.46E-15	840	977	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	5.8E-6	844	939	No hit	No description
CDD	cd00180	3.16E-12	850	977	No hit	No description
Gene3D	G3DSA:1.10.510.10	0.001	946	984	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 995 aa Download sequence Send to blast
MGENKGETTK KQQQQQLSSS TSPSPKGPIE ESTELRSLHH QQTTSAVVTG APFIPAPLFV 60 PIGATSSPFE QHFETVNPKR ARYSSAQWKL LPSASQQQQP PTQAQMATVV SSEATPSLIT 120 NPTQQKQPRT TAEASSSDTN SSPLRSPVPS LSAASAQETS KPEGEPHQHQ FRKGKYVSPV 180 WKPNEMLWLA RAWRFQYQGG SDLTSRVEQL PETTTGQVTS GDTAIAVQST RGKTRADKDR 240 EVAEFLNRHD VHRDAKTAGT KWDNMLGEFR KVYEWERGDK REQMGKSYFR LSPYERKAHR 300 LPASFDEEVF EELSQFMGPK MRTQSRGPSL SGSGDDSSRG TSLAAARALP PPPPFKEDDL 360 SLSGRTRQLV LTSGGEAYFH GTRGSLLGFD TAVDAAAGSS SSTKELRRIG KVRMTWEESV 420 SLWGEEGEHH RGRVRLQGSS FLNADELTFF DDSMVACTME AFEDGALKGF SVDKFVSGQQ 480 IKVFGRRKPS PSASVTPSGF TERVQLPLTE PSIRLPPWEF QDPTEYYVGC LRVPPTTLPS 540 LFELSWYLQE PPPEELRFPL RRDVYRDLPQ GKELFFTISN DPLDCRGITY DILSSIIRTN 600 PSISGATSSS RDSFIGVWDD CINRIVSKFC SVEVVIVRKQ PSSPMVDTLQ DEWPNVTGFV 660 RNFCLWRGEE TDQLREGQVD PSSSIIEKLL WTYLDLPYIL GYYAVGYSVT FCALCRSQDR 720 IIRTDLYSLD LSSPVERLKA LVPCYRVAGL LPLLADRCFN NFNNGGTYKQ LAFSDFERVD 780 MGNGNIMEMT PNTVTRLFSS RRKWAAVKEI YDCLDHRIPH AEFIYRSSEK DLALVFKPRG 840 LKFKPNNCEQ LVEALKYVTQ ALVALHDLSF MHRDLSWDKV MRRSDSENEW FLSGFDDAVG 900 APQLNPVHGI GEARGRHAPE MGRGMHGVKV DVWGVGHLVR TCGLGPNGVP KILRELQNRC 960 LDQNPEQRPT AADCYHHLLQ VQSSLQSSSP GVPY*

Sequence ? help Back to Top

Protein Sequence Length: 995 aa Download sequence Send to blast

MGENKGETTK KQQQQQLSSS TSPSPKGPIE ESTELRSLHH QQTTSAVVTG APFIPAPLFV  60
PIGATSSPFE QHFETVNPKR ARYSSAQWKL LPSASQQQQP PTQAQMATVV SSEATPSLIT  120
NPTQQKQPRT TAEASSSDTN SSPLRSPVPS LSAASAQETS KPEGEPHQHQ FRKGKYVSPV  180
WKPNEMLWLA RAWRFQYQGG SDLTSRVEQL PETTTGQVTS GDTAIAVQST RGKTRADKDR  240
EVAEFLNRHD VHRDAKTAGT KWDNMLGEFR KVYEWERGDK REQMGKSYFR LSPYERKAHR  300
LPASFDEEVF EELSQFMGPK MRTQSRGPSL SGSGDDSSRG TSLAAARALP PPPPFKEDDL  360
SLSGRTRQLV LTSGGEAYFH GTRGSLLGFD TAVDAAAGSS SSTKELRRIG KVRMTWEESV  420
SLWGEEGEHH RGRVRLQGSS FLNADELTFF DDSMVACTME AFEDGALKGF SVDKFVSGQQ  480
IKVFGRRKPS PSASVTPSGF TERVQLPLTE PSIRLPPWEF QDPTEYYVGC LRVPPTTLPS  540
LFELSWYLQE PPPEELRFPL RRDVYRDLPQ GKELFFTISN DPLDCRGITY DILSSIIRTN  600
PSISGATSSS RDSFIGVWDD CINRIVSKFC SVEVVIVRKQ PSSPMVDTLQ DEWPNVTGFV  660
RNFCLWRGEE TDQLREGQVD PSSSIIEKLL WTYLDLPYIL GYYAVGYSVT FCALCRSQDR  720
IIRTDLYSLD LSSPVERLKA LVPCYRVAGL LPLLADRCFN NFNNGGTYKQ LAFSDFERVD  780
MGNGNIMEMT PNTVTRLFSS RRKWAAVKEI YDCLDHRIPH AEFIYRSSEK DLALVFKPRG  840
LKFKPNNCEQ LVEALKYVTQ ALVALHDLSF MHRDLSWDKV MRRSDSENEW FLSGFDDAVG  900
APQLNPVHGI GEARGRHAPE MGRGMHGVKV DVWGVGHLVR TCGLGPNGVP KILRELQNRC  960
LDQNPEQRPT AADCYHHLLQ VQSSLQSSSP GVPY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.012G132300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002318853.1	0.0	uncharacterized protein LOC7482128
TrEMBL	B9I4H2	0.0	B9I4H2_POPTR; Uncharacterized protein
STRING	POPTR_0012s14050.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11857	28	31
Representative plant	OGRP9479	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	7e-07	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Potri.012G132300.1
Entrez Gene	7482128