PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.012G109900.1 | ||||||||
Common Name | POPTR_0012s11170g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 391aa MW: 44604.4 Da PI: 8.0087 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55 | 1e-17 | 11 | 53 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i + r tf kR++g+lKKA+E S+LC+++++viif++++k Potri.012G109900.1 11 IRKEKSRMLTFRKRKAGLLKKASEFSILCGVDACVIIFGPKQK 53 56677899********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.96E-19 | 1 | 88 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.054 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.6E-19 | 1 | 66 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 9.11E-23 | 2 | 70 | No hit | No description |
PRINTS | PR00404 | 5.6E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-18 | 11 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-9 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MGQKRIKMEL IRKEKSRMLT FRKRKAGLLK KASEFSILCG VDACVIIFGP KQKDDHQPVA 60 PETWPPNSEE VRCIINRYKG SDQPRRCYQV SDYFVDKKKQ IDSELARLHK QIIKAKYPAW 120 DDRLNSLYAD QLRVLVGHLD AKIDLADKKL GSFNANQYVM GAPGVQAASL SPSISHDMES 180 YMKSRDDNFL QLIHNSNPFD AQPPMVFYPE QSSHVTNLME RNYSNGYSAD LQVYYEPRPL 240 DDQLPVGFQS KQTSHGTTRN ASFWESNNGN CYSTDLQLYL EPNPLNVQPP MHFQPKQNAH 300 RTSSYLHAME DAIMKMACDQ YTSDQFGCKL SSSSNLPCVN RTPWMWDNVW FNNADSSVSY 360 IAPTKQPIMP SIQFPMSSFP HQMQSSEASD * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.012G109900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC297706 | 0.0 | KC297706.1 Populus tomentosa AGL24 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002318787.3 | 0.0 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2K1YC13 | 0.0 | A0A2K1YC13_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s11170.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 | Representative plant | OGRP3677 | 6 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 9e-30 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.012G109900.1 |
Entrez Gene | 7484348 |