PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G108500.1
Common NamePOPTR_0012s11030g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 241aa    MW: 26475.2 Da    PI: 9.2408
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G108500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.7e-2053102255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae Aa a+++a+++++g
  Potri.012G108500.1  53 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEAAALAYDEAALRFKG 102
                         7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.6E-3352111IPR001471AP2/ERF domain
SMARTSM003803.9E-3953116IPR001471AP2/ERF domain
PfamPF008478.3E-1453102IPR001471AP2/ERF domain
PROSITE profilePS5103224.94853110IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-2253111IPR016177DNA-binding domain
CDDcd000181.23E-2053111No hitNo description
PRINTSPR003671.5E-115465IPR001471AP2/ERF domain
PRINTSPR003671.5E-117692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDVMVSALAQ VIGSSHNSSA QVQENPLTST QSSTENDQTQ PAVQDQGNAR RRHYRGVRQR  60
PWGKWAAEIR DPKKAARVWL GTFETAEAAA LAYDEAALRF KGSKAKLNFP ERVPSGGTEL  120
GFFTRGQGLH TVTEPVSNHI MAPLARSQRS QEAYNPNNFQ YPQFLGTTSG YGLSHVMPPA  180
VPFGGETFLS PTSSSASSNS WPISSQQQQQ QQEELLRLSM QFGSSYNSRY DPSKYKDEGL  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2949116169ATERF1
3gcc_A7e-2949116169ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G108500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318176.21e-178ethylene-responsive transcription factor ERF113
TrEMBLB9I4111e-177B9I411_POPTR; Uncharacterized protein
STRINGPOPTR_0012s11030.11e-178(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.11e-42ERF family protein