PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.012G106100.1 | ||||||||
Common Name | POPTR_0012s10790g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARF | ||||||||
Protein Properties | Length: 855aa MW: 94869.2 Da PI: 6.6476 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.9 | 2e-23 | 156 | 257 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F Potri.012G106100.1 156 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGSEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL-- 243 99*****************************7333.34459************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 + +++el+v+v+r+ Potri.012G106100.1 244 RGENGELRVGVRRA 257 449999*****996 PP | |||||||
2 | Auxin_resp | 121.3 | 7.1e-40 | 282 | 364 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+dp+rW++SkWr+Lk Potri.012G106100.1 282 AWHAVSTGTMFTVYYKPRTSPAEFIVPFDQYMESVKSNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPSRWKDSKWRCLK 364 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.49E-40 | 152 | 285 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-41 | 153 | 271 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.55E-21 | 154 | 256 | No hit | No description |
SMART | SM01019 | 6.4E-23 | 156 | 258 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.942 | 156 | 258 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-21 | 156 | 257 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.9E-37 | 282 | 364 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.1E-10 | 718 | 812 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 5.89E-12 | 723 | 805 | No hit | No description |
PROSITE profile | PS51745 | 24.592 | 728 | 812 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 855 aa Download sequence Send to blast |
MASSEISAKA NSGNIKGGGE SFSSGYSEAM EGQKGHSTHP SSARDAETAL YNELWHACAG 60 PLVTVPREGD HVFYFPQGHL EQVEASTNQV ADQQMPLYDL PPKILCRVVN VQLKAEPDTD 120 EVFAQVTLLP LHNQDENASE KEPPPPPPPR FHVHSFCKTL TASDTSTHGG FSVLRRHADE 180 CLPPLDMSRQ PPTQELVAKD LHGSEWRFRH IFRGQPRRHL LQSGWSVFVS SKRLVAGDAF 240 IFLRGENGEL RVGVRRAMRQ QSNVPSSVIS SHSMHLGVLA TAWHAVSTGT MFTVYYKPRT 300 SPAEFIVPFD QYMESVKSNY SIGMRFKMRF EGEEAPEQRF TGTIVGIEDA DPSRWKDSKW 360 RCLKVRWDET STIPRPDRVS PWKIEPALAP PALNPLPMPR PKRPRANMVP SSPDSSVLTR 420 EGSSKVTADP SSASGFSRVL RGQEFSTLRG NFEEGNESDV AEKSVLWPPS ADDEKIDVLS 480 SSRRFGSEWW ISSARQEPTY TDLLSGFGAN ADSSHGFGAP FVDQTAGGAN PMKKHLSDQG 540 QFNLLASPWS IMSPGLSLKL SESNSRVPIQ GSSDVTYQSR ENIRYSAFSE YPMLHGLRVE 600 QSHGNCMMPP PPSHFDNHAH TRELIPKPKL VQEHNTGKSL DGNCKLFGIP LKISKPATPE 660 QAGQTNMVNE PMGHTQPASH QLTSESDQKS EHSRGSKLAD ENENEKPLQV GHMRMRDSHG 720 KAQNSSTRSC TKVHKQGIAL GRSVDLTRFN NYDELIAELD RLFEFNGELL APQKNWLIVY 780 TDDEDDMMLV GDDPWQEFVG MVRKIVIYTR EEVQRIKPGT LNSRVNENPS GVEGEDAKEA 840 KHLPLPSASS PLSC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-178 | 49 | 386 | 18 | 354 | Auxin response factor 1 |
4ldw_A | 1e-178 | 49 | 386 | 18 | 354 | Auxin response factor 1 |
4ldw_B | 1e-178 | 49 | 386 | 18 | 354 | Auxin response factor 1 |
4ldx_A | 1e-178 | 49 | 386 | 18 | 354 | Auxin response factor 1 |
4ldx_B | 1e-178 | 49 | 386 | 18 | 354 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.10411 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. Expressed in developing siliques. {ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078, ECO:0000269|PubMed:15960614}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00574 | DAP | Transfer from AT5G62000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.012G106100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002318767.2 | 0.0 | auxin response factor 2 | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A2K1YBW0 | 0.0 | A0A2K1YBW0_POPTR; Auxin response factor | ||||
STRING | POPTR_0012s10790.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3281 | 33 | 66 | Representative plant | OGRP550 | 15 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.012G106100.1 |
Entrez Gene | 7484881 |