PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.012G101000.1

Common Name

POPTR_0012s10290g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WRKY

Protein Properties

Length: 187aa MW: 21495 Da PI: 9.0383

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.012G101000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106	1.9e-33	99	157	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s+fprsYYrCt +gC+vkk+v+r+++d+++v++tYeg H+h+ Potri.012G101000.1 99 LDDGYRWRKYGQKTVKNSKFPRSYYRCTNNGCNVKKQVQRNSKDEEIVVTTYEGMHTHP 157 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.8E-34	84	157	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-29	91	158	IPR003657	WRKY domain
PROSITE profile	PS50811	30.745	94	159	IPR003657	WRKY domain
SMART	SM00774	1.7E-38	99	158	IPR003657	WRKY domain
Pfam	PF03106	1.2E-27	100	157	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MQMEKYQIFL PVSDPSSPSG SPSSLNMANP LIYFHGENEN GVRPESRTQH SDAKHSDPQT 60 SRVSSNSEIK VKPGVRGGDN NEFRKHKYAF QTRSQVDILD DGYRWRKYGQ KTVKNSKFPR 120 SYYRCTNNGC NVKKQVQRNS KDEEIVVTTY EGMHTHPIEK CTDNIEDILR QMQTYTPFEI 180 MPGHFL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-27	89	158	7	76	Probable WRKY transcription factor 4
2lex_A	4e-27	89	158	7	76	Probable WRKY transcription factor 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.012G101000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC208943	0.0	AC208943.1 Populus trichocarpa clone JGIACSB1089-H10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002318747.1	1e-140	probable WRKY transcription factor 75
TrEMBL	B9I3U6	1e-138	B9I3U6_POPTR; Uncharacterized protein
STRING	POPTR_0012s10290.1	1e-139	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1156	34	110
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	1e-51	WRKY DNA-binding protein 75

Link Out ? help Back to Top
Phytozome	Potri.012G101000.1
Entrez Gene	7484855