PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G100700.3
Common NamePOPTR_0012s10260g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SBP
Protein Properties Length: 331aa    MW: 36480.7 Da    PI: 8.3594
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G100700.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.24.3e-4293170178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +C v+gC++dls++++yhrrhkvCe hsk+p+v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  Potri.012G100700.3  93 MCLVDGCNSDLSTCRDYHRRHKVCELHSKTPQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 170
                         6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.0E-3587155IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.98391168IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-3992173IPR004333Transcription factor, SBP-box
PfamPF031103.4E-3194167IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDWNLKATSW DLTEFEQGAV PSICIDAFGR PTNFGANRTG GGFSIDLKLG RVGNSSDESM  60
VNWKQPGVSK LESSPSGSTK RARGANNGTQ VAMCLVDGCN SDLSTCRDYH RRHKVCELHS  120
KTPQVTIGGQ KQRFCQQCSR FHSLEEFDEG KRSCRKRLDG HNRRRRKPQP DPFSHPPSFL  180
PNHQGTQIFP FSSSHVYHST AVVNSTWSGV ANTEADGGHY NLHQLPDKQN LFLGSSSNSY  240
KGGKLFPFLQ CDNPCLNNQT SEASVCLPLP RAIAFPGSSG ASSHSMFCDR LATQVQDSDC  300
ALSLFCHQHR RMHGETPCCN DITQSPFRIP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-2984167184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150167KRSCRKRLDGHNRRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G100700.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322273.30.0squamosa promoter-binding-like protein 13A
RefseqXP_024441807.10.0squamosa promoter-binding-like protein 13A
RefseqXP_024441808.10.0squamosa promoter-binding-like protein 13A
RefseqXP_024441809.10.0squamosa promoter-binding-like protein 13A
TrEMBLA0A2K1YBM50.0A0A2K1YBM5_POPTR; SBP family protein
STRINGPOPTR_0012s10260.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.14e-71SBP family protein