PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G100700.1
Common NamePOPTR_0012s10260g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SBP
Protein Properties Length: 347aa    MW: 38302.6 Da    PI: 8.3604
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G100700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.14.7e-42109186178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +C v+gC++dls++++yhrrhkvCe hsk+p+v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  Potri.012G100700.1 109 MCLVDGCNSDLSTCRDYHRRHKVCELHSKTPQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 186
                         6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.7E-35103171IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.983107184IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.62E-39108189IPR004333Transcription factor, SBP-box
PfamPF031103.7E-31110183IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGGWKDQTRS SSSEHFMDWN LKATSWDLTE FEQGAVPSIC IDAFGRPTNF GANRTGGGFS  60
IDLKLGRVGN SSDESMVNWK QPGVSKLESS PSGSTKRARG ANNGTQVAMC LVDGCNSDLS  120
TCRDYHRRHK VCELHSKTPQ VTIGGQKQRF CQQCSRFHSL EEFDEGKRSC RKRLDGHNRR  180
RRKPQPDPFS HPPSFLPNHQ GTQIFPFSSS HVYHSTAVVN STWSGVANTE ADGGHYNLHQ  240
LPDKQNLFLG SSSNSYKGGK LFPFLQCDNP CLNNQTSEAS VCLPLPRAIA FPGSSGASSH  300
SMFCDRLATQ VQDSDCALSL FCHQHRRMHG ETPCCNDITQ SPFRIP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-29100183184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166183KRSCRKRLDGHNRRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G100700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322273.30.0squamosa promoter-binding-like protein 13A
RefseqXP_024441807.10.0squamosa promoter-binding-like protein 13A
RefseqXP_024441808.10.0squamosa promoter-binding-like protein 13A
RefseqXP_024441809.10.0squamosa promoter-binding-like protein 13A
TrEMBLA0A0S2GL110.0A0A0S2GL11_POPTO; Uncharacterized protein
STRINGPOPTR_0012s10260.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.18e-71SBP family protein