PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.012G100200.1 | ||||||||
Common Name | POPTR_0012s10190g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 205aa MW: 23746.3 Da PI: 10.5354 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.1 | 1.3e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien ++rqvtfskRrng+lKKA+ELS+LCdaev++i+fs+tgk+y ++s Potri.012G100200.1 9 KRIENPTRRQVTFSKRRNGLLKKAFELSILCDAEVSLIVFSPTGKFYQFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 68.5 | 2.1e-23 | 82 | 172 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++ e +++e++ L+k i++ + ++Rh +Ged+e L +keL+qLe+qL+ +++++RskK ++ e+++ l+ k++++qeen +L+k+l Potri.012G100200.1 82 SHTRSLEFWRREIEELQKTINETEAKLRHCIGEDIEMLGMKELKQLERQLKAGVERVRSKKLRIAAEHVNWLKGKQRSIQEENACLKKRLH 172 5667789********************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.324 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.0E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-33 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.93E-39 | 2 | 76 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.3E-21 | 82 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.14 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MGRGKVELKR IENPTRRQVT FSKRRNGLLK KAFELSILCD AEVSLIVFSP TGKFYQFASH 60 EMERTIARYR SEAGLSGPND HSHTRSLEFW RREIEELQKT INETEAKLRH CIGEDIEMLG 120 MKELKQLERQ LKAGVERVRS KKLRIAAEHV NWLKGKQRSI QEENACLKKR LHELHGGNIS 180 SRIWEPNARK AIQLRTIDDG SHLH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-22 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 7e-22 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 7e-22 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 7e-22 | 1 | 69 | 1 | 69 | MEF2C |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.012G100200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024438032.1 | 1e-149 | truncated transcription factor CAULIFLOWER D isoform X2 | ||||
TrEMBL | B9I3T7 | 1e-147 | B9I3T7_POPTR; Uncharacterized protein | ||||
STRING | Gorai.007G043400.1 | 2e-80 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26310.1 | 9e-47 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.012G100200.1 |
Entrez Gene | 7484851 |