PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G100200.1
Common NamePOPTR_0012s10190g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 205aa    MW: 23746.3 Da    PI: 10.5354
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G100200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.11.3e-29959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien ++rqvtfskRrng+lKKA+ELS+LCdaev++i+fs+tgk+y ++s
  Potri.012G100200.1  9 KRIENPTRRQVTFSKRRNGLLKKAFELSILCDAEVSLIVFSPTGKFYQFAS 59
                        79***********************************************86 PP
2K-box68.52.1e-2382172999
               K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                          +++  e +++e++ L+k i++ + ++Rh +Ged+e L +keL+qLe+qL+ +++++RskK ++  e+++ l+ k++++qeen +L+k+l 
  Potri.012G100200.1  82 SHTRSLEFWRREIEELQKTINETEAKLRHCIGEDIEMLGMKELKQLERQLKAGVERVRSKKLRIAAEHVNWLKGKQRSIQEENACLKKRLH 172
                         5667789********************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.324161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-33290IPR002100Transcription factor, MADS-box
CDDcd002651.93E-39276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-303859IPR002100Transcription factor, MADS-box
PfamPF014862.3E-2182171IPR002487Transcription factor, K-box
PROSITE profilePS5129712.1487177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGRGKVELKR IENPTRRQVT FSKRRNGLLK KAFELSILCD AEVSLIVFSP TGKFYQFASH  60
EMERTIARYR SEAGLSGPND HSHTRSLEFW RREIEELQKT INETEAKLRH CIGEDIEMLG  120
MKELKQLERQ LKAGVERVRS KKLRIAAEHV NWLKGKQRSI QEENACLKKR LHELHGGNIS  180
SRIWEPNARK AIQLRTIDDG SHLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-22169169MEF2C
5f28_B7e-22169169MEF2C
5f28_C7e-22169169MEF2C
5f28_D7e-22169169MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G100200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438032.11e-149truncated transcription factor CAULIFLOWER D isoform X2
TrEMBLB9I3T71e-147B9I3T7_POPTR; Uncharacterized protein
STRINGGorai.007G043400.12e-80(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.19e-47MIKC_MADS family protein