PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.012G087100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TALE | ||||||||
Protein Properties | Length: 341aa MW: 37951.3 Da PI: 4.7081 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.8 | 2.2e-09 | 283 | 317 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp+++++ LA+++gL+++q+ +WF N+R ++ Potri.012G087100.1 283 KWPYPTEADKVALAESTGLDQKQINNWFINQRKRH 317 569*****************************885 PP | |||||||
2 | ELK | 30.7 | 6.9e-11 | 237 | 258 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK+ LlrKYsgy+++Lk+ Fs Potri.012G087100.1 237 ELKDKLLRKYSGYISTLKHAFS 258 9*****************8665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.2E-22 | 97 | 141 | IPR005540 | KNOX1 |
Pfam | PF03790 | 4.2E-21 | 98 | 136 | IPR005540 | KNOX1 |
SMART | SM01256 | 5.5E-27 | 149 | 200 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.0E-23 | 153 | 199 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.551 | 237 | 257 | IPR005539 | ELK domain |
SMART | SM01188 | 2.6E-6 | 237 | 258 | IPR005539 | ELK domain |
Pfam | PF03789 | 6.0E-10 | 237 | 258 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.406 | 257 | 320 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-13 | 259 | 324 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-19 | 259 | 333 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-27 | 262 | 321 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.29E-14 | 269 | 321 | No hit | No description |
Pfam | PF05920 | 2.8E-16 | 277 | 316 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 295 | 318 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MMEELYGLQS TSSDYSLQVP SENMVSPVAN YYHPVGFTSP AGEPSFPVFG SEQMFCGSSV 60 SDAASMGAEL HQKQQQQSGG VGVGDHSNRN NSEEVSCAIR AKIASHPLYP KLLEAYIDCQ 120 KVGAPPEMAY LLDEIRLVND VSKGSNDTVA SCLGADPELD EFMETYCDVL MKYKADLSRP 180 FDEATTFLND IEAQFNTLCN GPSRSQVYDE AAGSSDEDAS GGEAGMQDST RINEDRELKD 240 KLLRKYSGYI STLKHAFSKQ KKKGKLPKEA RQILLNWWNI HNKWPYPTEA DKVALAESTG 300 LDQKQINNWF INQRKRHWKP SENMQFAVVD SLYGPFFMND * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First detected in torpedo stage embryos at the boundaries between the presumptive SAM and the cotyledons. Later expressed between the cotyledons and the meristem, and between the cotyledons. In seedlings, localised in stipules and at the boundaries between the SAM and the emerging primordia. Expressed at the site of lateral roots. {ECO:0000269|PubMed:16798887}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed predominantly in shoot apices of seedlings, and, to a lower extent, in rosette leaves. {ECO:0000269|PubMed:11311158}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.012G087100.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024437653.1 | 0.0 | homeobox protein knotted-1-like 2 | ||||
Swissprot | Q84JS6 | 1e-109 | KNAT6_ARATH; Homeobox protein knotted-1-like 6 | ||||
TrEMBL | A0A2K1YAY9 | 0.0 | A0A2K1YAY9_POPTR; Uncharacterized protein | ||||
STRING | XP_002511373.1 | 1e-157 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF620 | 34 | 125 | Representative plant | OGRP167 | 17 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 1e-111 | KNOTTED1-like homeobox gene 6 |
Link Out ? help Back to Top | |
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Phytozome | Potri.012G087100.1 |
Publications ? help Back to Top | |||
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