PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G084100.1
Common NamePOPTR_0012s08600g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 371aa    MW: 41640.6 Da    PI: 6.8402
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G084100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEde+l ++++++G g+W+++++  g+ R++k+c++rw +yl
  Potri.012G084100.1 14 KGLWSPEEDERLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                        678*******************************************97 PP
2Myb_DNA-binding44.53.5e-1467110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg ++++E++l++  ++ lG++ W+ Ia+ ++ gRt++++k++w++
  Potri.012G084100.1  67 RGMFSQQEEDLIISFHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110
                         788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.9E-25664IPR009057Homeodomain-like
PROSITE profilePS5129424.195965IPR017930Myb domain
SuperFamilySSF466891.83E-2812108IPR009057Homeodomain-like
SMARTSM007171.0E-111363IPR001005SANT/Myb domain
PfamPF002492.6E-141461IPR001005SANT/Myb domain
CDDcd001671.27E-101761No hitNo description
Gene3DG3DSA:1.10.10.609.0E-2565116IPR009057Homeodomain-like
SMARTSM007178.9E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129418.93166116IPR017930Myb domain
PfamPF002493.2E-1367111IPR001005SANT/Myb domain
CDDcd001677.48E-1070109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGRHSCCLKQ KLRKGLWSPE EDERLFNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLIIS FHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG  120
IDPATHKPLS QVEVKEEKIC TEKASFQIPQ SKGLPILSNF SAPEPAFIIN DTAYNSSGLT  180
EASREQFINK QAYDPIAYFE FPPSIVPTGY NSNLSSVYHP TVRPLDQNQF ETSSNFVFTS  240
MPSLTSFDHG SMSGTDFSDN SASRMSSMFL NEAKESSSNS SNISNYAGYQ MSNMVENAAG  300
FSSWDSDDKL ESVFQYHQVN GIKTGELKPS PWHDAGQLHT HQNSVDFSSC PLKSLSEDLK  360
GANFDGFHQI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
1h8a_C3e-28711620128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.28030.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G084100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707850.0AB970785.1 Populus tremula x Populus tremuloides PtxtMYB148 mRNA for MYB transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318064.10.0transcription factor MYB7
TrEMBLB9I3D30.0B9I3D3_POPTR; MYB family protein
STRINGPOPTR_0012s08600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58313353
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.14e-83myb domain protein 86