PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G082000.1
Common NamePOPTR_0012s08360g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 448aa    MW: 50227.3 Da    PI: 7.1045
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G082000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.4e-18196242148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WTteEd ll+++v+q+G + W+ +a+++  gR +kqc++rw+++l
  Potri.012G082000.1 196 KGQWTTEEDRLLIHLVEQHGVRKWSDVAKMLS-GRIGKQCRERWHNHL 242
                         799*****************************.*************97 PP
2Myb_DNA-binding574.5e-18248290145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +++W+ eEd++l++a+  lG++ W+ Ia++++ gRt++++k++w+
  Potri.012G082000.1 248 KDAWSVEEDKILIQAHSVLGNR-WAEIAKRLP-GRTENSIKNHWN 290
                         679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.87191246IPR017930Myb domain
SuperFamilySSF466891.04E-31194289IPR009057Homeodomain-like
SMARTSM007171.2E-16195244IPR001005SANT/Myb domain
PfamPF002494.7E-17196242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-27197249IPR009057Homeodomain-like
CDDcd001672.77E-15199242No hitNo description
PROSITE profilePS5129421.953247297IPR017930Myb domain
SMARTSM007171.0E-17247295IPR001005SANT/Myb domain
PfamPF002491.6E-16248290IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-22250295IPR009057Homeodomain-like
CDDcd001671.28E-13250293No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MELDNNVKKE KPVSQPMFLS SKACIEEEYF PFETPCPSSK GFLQGFSHLD DHGNANGSSS  60
NPLFGVQTGS NFDSFDAFPY GPSSNIDLYD YECKPFAGNI NGGGGHGQVN DSFQSGGYSN  120
LSSQRNSIDE IGSNQGYTSL SFEEAKPVSF VVQDEVSCVG TAENECKNKM GLNMTRTLQP  180
FARKTWKGRK KNSVVKGQWT TEEDRLLIHL VEQHGVRKWS DVAKMLSGRI GKQCRERWHN  240
HLRPDIKKDA WSVEEDKILI QAHSVLGNRW AEIAKRLPGR TENSIKNHWN ATKRKQYSKR  300
KCRPKYPRAS LLQDYIKSLN LNSGTTWKDH GITTASTAAD VIPDNTANMK APEQQPRDLV  360
LFKDNDGGLV PCYSFSEVPD FDNIQEKMFQ GGCSVDSILD GLPCDHSSVH EKRLQMKVPE  420
QDYATPFMGF EVKKEVDLVE MISQSKM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-451942962104C-Myb DNA-Binding Domain
1msf_C7e-451942962104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G082000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318055.20.0transcription factor MYB98
TrEMBLA0A2K1YAQ80.0A0A2K1YAQ8_POPTR; Uncharacterized protein
STRINGPOPTR_0012s08360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.16e-87myb domain protein 98