PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G073900.1
Common NamePOPTR_0012s07560g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 314aa    MW: 34157.1 Da    PI: 9.1694
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G073900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.4e-1496141247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++WT+eE+++++ + +++G+g+W+ I+r +  +Rt  q+ s+ qk+
  Potri.012G073900.1  96 LPWTEEEHKRFLVGLQKMGKGDWRGISRNFVRTRTSTQVASHAQKH 141
                         69******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.54190146IPR017930Myb domain
SuperFamilySSF466892.47E-1691147IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-1593144IPR006447Myb domain, plants
SMARTSM007172.4E-994144IPR001005SANT/Myb domain
PfamPF002494.4E-1197141IPR001005SANT/Myb domain
CDDcd001674.42E-997142No hitNo description
Gene3DG3DSA:1.10.10.605.7E-1197141IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006338Biological Processchromatin remodeling
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0035066Biological Processpositive regulation of histone acetylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0004402Molecular Functionhistone acetyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MVAGSSSTGS GVEGAAETRP KEILLFGVRV VVDNMRKIVS LNNMNDYEHL NDNEEDEEAA  60
AGASASAAVS GYMSADDTVQ HSSSASERRS QRKRGLPWTE EEHKRFLVGL QKMGKGDWRG  120
ISRNFVRTRT STQVASHAQK HFLRNSNVNR RRRRSSLFDI TTDMVTETPM EEQQALCQDS  180
KSNNQAPKSN PPLQANSTTS FPGVLPFPIR RRTVSPAVSP LQIESPIMEN RSLGQGNQSL  240
NYSTNLVLTV PVVPAPCTSV MPDLNLNLKP VADSSPLSLD LSSSSDQRAS SSRHSAFQTM  300
SSLKNGDNII VVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.90820.0bud
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00149DAPTransfer from AT1G19000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G073900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166840.0AC216684.1 Populus trichocarpa clone POP030-A02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318623.30.0transcription factor MYB1R1
SwissprotQ2V9B01e-63MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A2K1YAB40.0A0A2K1YAB4_POPTR; Uncharacterized protein
STRINGPOPTR_0012s07560.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42483154
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.17e-46MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]