PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G056300.2
Common NamePOPTR_0012s05280g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 309aa    MW: 34818 Da    PI: 7.9677
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G056300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.92.8e-5551301128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+++yL++kv++++++  +++ +vd++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke
  Potri.012G056300.2   5 LPPGFRFHPTDEELITCYLTRKVSDTSFTS-KAMVDVDLNKCEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDKE 94 
                         79*************************999.88***************988999************************************* PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++  g lvg+kktLvfy+grap+gek++Wvmheyrl
  Potri.012G056300.2  95 IFR-AGVLVGMKKTLVFYRGRAPRGEKSNWVMHEYRL 130
                         ***.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-643151IPR003441NAC domain
PROSITE profilePS5100559.7655151IPR003441NAC domain
PfamPF023651.2E-286130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDEELIT CYLTRKVSDT SFTSKAMVDV DLNKCEPWDL PGKASMGEKE  60
WYFFSLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIFRAGV LVGMKKTLVF YRGRAPRGEK  120
SNWVMHEYRL DDKHPFKSTK EEWVVCRVFQ KSTEVKKPQQ EPSSQQSLGS PCDTNSIVND  180
KFGDIANSSS GFNNILAHSY NNESNVNVDS HMNWAAAREA ATLPSLAWPS GLLSTNLTMN  240
SLLLKALQLR SYQQREATTT NYSFLTNGIP HEYGAALGSN FQASSSKVLD SAPQPQQEQP  300
FSLDSINW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-56415716171NO APICAL MERISTEM PROTEIN
1ut4_B5e-56415716171NO APICAL MERISTEM PROTEIN
1ut7_A5e-56415716171NO APICAL MERISTEM PROTEIN
1ut7_B5e-56415716171NO APICAL MERISTEM PROTEIN
3swm_A5e-56415719174NAC domain-containing protein 19
3swm_B5e-56415719174NAC domain-containing protein 19
3swm_C5e-56415719174NAC domain-containing protein 19
3swm_D5e-56415719174NAC domain-containing protein 19
3swp_A5e-56415719174NAC domain-containing protein 19
3swp_B5e-56415719174NAC domain-containing protein 19
3swp_C5e-56415719174NAC domain-containing protein 19
3swp_D5e-56415719174NAC domain-containing protein 19
4dul_A5e-56415716171NAC domain-containing protein 19
4dul_B5e-56415716171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G056300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438025.10.0NAC domain-containing protein 92
TrEMBLA0A2K1Y9E50.0A0A2K1Y9E5_POPTR; Uncharacterized protein
STRINGPOPTR_0012s05280.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-109NAC domain containing protein 58