PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G055600.1
Common NamePOPTR_0012s05200g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 328aa    MW: 37246 Da    PI: 7.6179
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G055600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.6e-192471148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd llv++++++G g+W++ a++ g++Rt+k+c++rw++yl
  Potri.012G055600.1 24 RGPWTLEEDTLLVHYIARHGEGRWNLLAKRAGLRRTGKSCRLRWLNYL 71
                        89********************************************97 PP
2Myb_DNA-binding53.26.8e-1777120146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
  Potri.012G055600.1  77 RGNLTPQEQLLILDLHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 120
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.3091975IPR017930Myb domain
SuperFamilySSF466897.7E-3122118IPR009057Homeodomain-like
SMARTSM007175.9E-162373IPR001005SANT/Myb domain
PfamPF002491.2E-172471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-232578IPR009057Homeodomain-like
CDDcd001671.17E-122671No hitNo description
PROSITE patternPS0017503948IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
SMARTSM007174.7E-1576124IPR001005SANT/Myb domain
PROSITE profilePS5129420.64676126IPR017930Myb domain
PfamPF002491.8E-1577120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2379125IPR009057Homeodomain-like
CDDcd001678.56E-1281120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MRVDIMSSSK KTTSSKEDDA ELRRGPWTLE EDTLLVHYIA RHGEGRWNLL AKRAGLRRTG  60
KSCRLRWLNY LKPDVKRGNL TPQEQLLILD LHSKWGNRWS KIAQHLPGRT DNEIKNYWRT  120
RVQKQARHLR IDANSTAFQD IIRRSWMPRL LQKIGGSSTS SSAMTCQSPA VSQLIPNYAP  180
QLSAFPTALP PPQQQEAPLD MSVMMHCMEH REQTSDSEHG TSSCISSAES MNVSQMSHLS  240
EYPKSPFQAM GNNGDYSTLV KDCYYVDSNF YDMEAINLAT MSVPGELGIS AVDRHMGDGD  300
WAGYDFGDTV WNMDELWQFR NLQGKEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-25211251104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G055600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318546.10.0transcription factor MYB62
TrEMBLB9I2L10.0B9I2L1_POPTR; Uncharacterized protein
STRINGPOPTR_0012s05200.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.18e-81myb domain protein 62