PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G043700.1
Common NamePOPTR_0012s04070g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-X1
Protein Properties Length: 1109aa    MW: 119805 Da    PI: 7.8466
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G043700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X122.62.3e-07412429118
            zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                         CG+H+C++ CH G+C pC
  Potri.012G043700.1 412 CGMHQCKEVCHSGDCAPC 429
                         ****************** PP
2zf-NF-X118.64.1e-06508526119
            zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                         CG+H+C++lCH G CppC 
  Potri.012G043700.1 508 CGQHSCESLCHSGHCPPCL 526
                         ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578502.12E-6112183No hitNo description
PROSITE profilePS500168.725120181IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590123178IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.406123179IPR001841Zinc finger, RING-type
CDDcd060085.45E-5212273No hitNo description
SMARTSM004380.039235253IPR000967Zinc finger, NF-X1-type
PfamPF014221.8237252IPR000967Zinc finger, NF-X1-type
CDDcd060084.86E-11280328No hitNo description
SMARTSM004380.012290309IPR000967Zinc finger, NF-X1-type
PfamPF014220.0033292307IPR000967Zinc finger, NF-X1-type
CDDcd060082.10E-9344387No hitNo description
SMARTSM004380.007354373IPR000967Zinc finger, NF-X1-type
PfamPF014220.0097354371IPR000967Zinc finger, NF-X1-type
CDDcd060081.74E-13402450No hitNo description
SMARTSM004383.4E-5412431IPR000967Zinc finger, NF-X1-type
PfamPF014223.1E-6412429IPR000967Zinc finger, NF-X1-type
SMARTSM00438170470504IPR000967Zinc finger, NF-X1-type
PfamPF0142218470481IPR000967Zinc finger, NF-X1-type
CDDcd060086.71E-9498541No hitNo description
SMARTSM004382.0E-4508527IPR000967Zinc finger, NF-X1-type
PfamPF014229.9E-5508525IPR000967Zinc finger, NF-X1-type
CDDcd060082.70E-5555603No hitNo description
SMARTSM004380.065565583IPR000967Zinc finger, NF-X1-type
PfamPF014225.8565582IPR000967Zinc finger, NF-X1-type
SMARTSM004384.8618648IPR000967Zinc finger, NF-X1-type
PfamPF014220.24618633IPR000967Zinc finger, NF-X1-type
CDDcd060081.29E-5646695No hitNo description
PfamPF0142264650676IPR000967Zinc finger, NF-X1-type
SMARTSM004380.013657678IPR000967Zinc finger, NF-X1-type
PfamPF014243.9E-5788853IPR001374R3H domain
Gene3DG3DSA:3.30.70.3307.0E-5895945IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1109 aa     Download sequence    Send to blast
MSFQPRNDGG DNNNGSRSRF PTRQTWVPRG SNPSLPLNGD VNPNPNPNPP SSFSSRNNGN  60
GGHSSHGTGV ADYRYKGGVN APRGGQMGRG KERGVETREV KDPNLPQLAQ EIQEKLLKST  120
VECMICYDMV RRSAPVWSCS SCFSIFHLNC IKKWARAPTS VDLIAEKNQG FNWRCPGCQS  180
VQLTSLKDIR YVCFCGKRTD PPSDLYLTPH SCGEPCGKQL EKEVPGADGS REGLCPHNCV  240
LQCHPGPCPP CKAFAPPSLC PCGKKRITTR CADRKSVLTC GQRCDKLLEC WRHRCEQICH  300
VGPCNPCQVL INASCFCKKN TEVVLCGDMA VKGEVKAEDG VFSCNSTCGK VLGCGNHICG  360
ETCHPGDCGD CEFMPGRVKS CYCGKTSLQE ERNSCLDPIP TCAQICGKSL PCGMHQCKEV  420
CHSGDCAPCL VSVTQKCRCG STSRTVECYK TTSENEKFLC DKPCGRKKNC GRHRCSERCC  480
PLSNSNNQFS GDWDPHFCQM ACGKKLRCGQ HSCESLCHSG HCPPCLETIF TDLTCACGRT  540
SIPPPLPCGT PPPSCQLPCS VPQPCGHPAS HSCHFGDCPP CSVPVAKECV GGHVILGNIP  600
CGSRDIRCNK LCGKTRQCGL HACGRTCHSP PCDTSPGTET GSRASCGQTC GAPRRDCRHT  660
CTALCHPYAP CPDVRCEFPV TITCSCGRMT ASVPCDAGGS NGGYNDTILE ASILHKLPAP  720
LQPVESSGKK IPLGQRKFMC DDECAKFERK RVLADAFDIN PPNLEALHFG ENSSVTELIG  780
DLYRRDPKWV LAVEERCKYL VLSKSRGTTS GLKIHVFCPM LKDKRDAVRL IAERWKVAIY  840
SAGWEPKRFI VIHATPKSKT PSRVIGIKGT TTLSASHPPV FDALVDMDPR LVVSFLDLPR  900
EADISSLVLR FGGECELVWL NDKNALAVFN DPARAATAMR RLDHGSVYYG AAVVPQNSGA  960
SMGSPATNAW GTAGTAKEGT ITALKGTSWK KAVVQESGWR EDSWGDEEWS GGGSADVQAS  1020
AWKGKEHPIS TSINRWSVLD SDKADSSSAA SVRIEDPAKR VAEILSSSGL ESNVSTSNIS  1080
VQTAMQPGGV SSEEDLSEVV DDWEKAYD*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G043700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2168360.0AC216836.1 Populus trichocarpa clone POP013-I22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317701.20.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A2K1Y8R80.0A0A2K1Y8R8_POPTR; Uncharacterized protein
STRINGPOPTR_0012s04070.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Representative plantOGRP39501420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1