PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.012G040900.1 | ||||||||
Common Name | POPTR_0012s03770g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 183aa MW: 20662.9 Da PI: 6.8633 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 90.9 | 1.2e-28 | 9 | 59 | 5 | 58 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 YkeCl+NhAaslG++a+DGCgEf+ + +++ ++l+CaACgCHRnFHR+ + Potri.012G040900.1 9 LYKECLRNHAASLGSYATDGCGEFTLD---DTSLSTLQCAACGCHRNFHRKVSY 59 7*************************8...6789*****************875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.5E-24 | 9 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-18 | 10 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.972 | 10 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.5E-24 | 10 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-29 | 99 | 165 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.57E-16 | 100 | 164 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.6E-31 | 106 | 164 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 183 aa Download sequence Send to blast |
MESDSTNDLY KECLRNHAAS LGSYATDGCG EFTLDDTSLS TLQCAACGCH RNFHRKVSYS 60 NRRDHIMHSP SSETVVMEMM DYAEGNNERN SRPPVMVVES GERSGKKRFR TKFTAEQREK 120 MMEFAEKLGW KLQRKDEEDE VERFCEGIGV SRQVFKVWMH NHKNSSSTTS ASPGNASSLT 180 TQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 7e-22 | 107 | 169 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.012G040900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002318316.3 | 1e-136 | zinc-finger homeodomain protein 9 | ||||
Swissprot | Q9SB61 | 3e-42 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A2K1Y8K4 | 1e-135 | A0A2K1Y8K4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s03770.1 | 1e-135 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7982 | 28 | 44 | Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24660.1 | 1e-44 | homeobox protein 22 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.012G040900.1 |
Entrez Gene | 7485185 |
Publications ? help Back to Top | |||
---|---|---|---|
|