PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.012G040800.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

BBR-BPC

Protein Properties

Length: 270aa MW: 29885.4 Da PI: 10.2422

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.012G040800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	235	5.5e-72	1	269	1	301
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlms.siaerdakirernlalsekkaavaerd.........maflqrdkalaernkalverdnk 80 md+d s + rn+gyyep+ s+k n+glqlms +++e+ +++ +++ k+ +++rd m++ +r +++ + +k Potri.012G040800.1 1 MDEDHSLDiRNWGYYEPT-SVKGNVGLQLMSpTMPEKPLLGSRSKTIMKSVKGGFHHRDigvspsmfpMEY-MRGAWIGQ--------SEK 81 999999999******9.*******9456688776666666699*******999999999999.89999998........99 PP GAGA_bind 81 llalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkks 171 +l++ + +++ + +vl++t+ + ++q+ ++++ + e+l+ ++e a ++k + +kkrq++k k+ kakk k+ + Potri.012G040800.1 82 FLKMFPGNHN-------YAEVLPETSAARHMQM------FQPPYS-ANDETLD--QVEAAGVVEKANGPEKKRQHPKALKSLKAKKGKRGP 156 ****8886.......88999****999......344555.3344444..445666677777888889999999999999999988 PP GAGA_bind 172 ekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSq 262 +++k + +++ +r ++ kk+ ++ +ng+s+D+s +P+PvCsCtG+++qCY+WG+GGWqSaCCtt iS +PLP+stkrrg+Ri grKmS Potri.012G040800.1 157 QVPKPDGSPSA--QRGRSAKKTAEILINGISMDISVFPIPVCSCTGSPQQCYRWGCGGWQSACCTTCISGHPLPISTKRRGTRIEGRKMS- 244 88877766666..79**********************************************************************9. PP GAGA_bind 263 gafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 y l+n +DL++hWAkHGt+kfvtir Potri.012G040800.1 245 --------------YVLANRIDLRTHWAKHGTDKFVTIR 269 ..............7899******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	1.3E-84	1	269	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	2.0E-156	1	269	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MDEDHSLDIR NWGYYEPTSV KGNVGLQLMS PTMPEKPLLG SRSKTIMKSV KGGFHHRDIG 60 VSPSMFPMEY MRGAWIGQSE KFLKMFPGNH NYAEVLPETS AARHMQMFQP PYSANDETLD 120 QVEAAGVVEK ANGPEKKRQH PKALKSLKAK KGKRGPQVPK PDGSPSAQRG RSAKKTAEIL 180 INGISMDISV FPIPVCSCTG SPQQCYRWGC GGWQSACCTT CISGHPLPIS TKRRGTRIEG 240 RKMSYVLANR IDLRTHWAKH GTDKFVTIR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.012G040800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024437708.1	0.0	protein BASIC PENTACYSTEINE2-like
TrEMBL	A0A2K1Y8K0	0.0	A0A2K1Y8K0_POPTR; Uncharacterized protein
STRING	POPTR_0012s03750.1	1e-151	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2370	32	83
Representative plant	OGRP1865	12	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	3e-70	basic pentacysteine 2

Link Out ? help Back to Top
Phytozome	Potri.012G040800.1